Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.94■■□□□ 1.74
SMC1BQ8NDV3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 AC010141.2-201ENST00000452426 721 ntBASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
SMC1BQ8NDV3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SMC1BQ8NDV3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 SNORA78-201ENST00000459373 127 ntBASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
SMC1BQ8NDV3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.9■■□□□ 1.74
SMC1BQ8NDV3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 FAM197Y4-202ENST00000622692 608 ntBASIC25.89■■□□□ 1.74
SMC1BQ8NDV3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC1BQ8NDV3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC1BQ8NDV3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.73
SMC1BQ8NDV3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC1BQ8NDV3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SMC1BQ8NDV3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 AC138907.5-202ENST00000569484 235 ntBASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMC1BQ8NDV3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC1BQ8NDV3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AC004687.1-201ENST00000579003 1625 ntBASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms