Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 AC005082.1-201ENST00000413042 2259 ntBASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 AC044849.2-201ENST00000606596 710 ntBASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 AL162393.1-201ENST00000437852 946 ntBASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLRN3Q8NCR9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CLRN3Q8NCR9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CLRN3Q8NCR9 AC087741.3-201ENST00000624270 1347 ntBASIC17.21■□□□□ 0.34
CLRN3Q8NCR9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 FEM1AP4-201ENST00000443167 1987 ntBASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLRN3Q8NCR9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.19■□□□□ 0.34
CLRN3Q8NCR9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN3Q8NCR9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms