Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
LINC00643Q86TS7 AFG3L1P-217ENST00000557444 2447 ntBASIC13.56□□□□□ -0.24
LINC00643Q86TS7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00643Q86TS7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00643Q86TS7 AC098818.2-201ENST00000564925 2320 ntBASIC13.55□□□□□ -0.24
LINC00643Q86TS7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00643Q86TS7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00643Q86TS7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms