Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.67■■■□□ 2.182e-8■■■□□ 17.4
U2AF1Q01081 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC10.55□□□□□ -0.722e-8■■■□□ 17.4
U2AF1Q01081 FTX-216ENST00000638985 1367 ntTSL 5 BASIC18.68■□□□□ 0.582e-6■■■□□ 17.3
U2AF1Q01081 FTX-211ENST00000603672 1077 ntTSL 516.89■□□□□ 0.292e-6■■■□□ 17.3
U2AF1Q01081 FTX-209ENST00000602812 2356 ntTSL 1 (best)13.69□□□□□ -0.222e-6■■■□□ 17.3
U2AF1Q01081 FTX-215ENST00000638681 9771 ntTSL 5 BASIC11.68□□□□□ -0.542e-6■■■□□ 17.3
U2AF1Q01081 FTX-206ENST00000602420 751 ntTSL 37.22□□□□□ -1.252e-6■■■□□ 17.3
U2AF1Q01081 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.45□□□□□ -1.382e-6■■■□□ 17.3
U2AF1Q01081 RRBP1-207ENST00000468428 2200 ntTSL 221.4■■□□□ 1.021e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC21.27■□□□□ 0.991e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.721e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.431e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC17.03■□□□□ 0.321e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.171e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-210ENST00000610403 3309 ntTSL 5 BASIC15.26■□□□□ 0.031e-14■■■□□ 17.3
U2AF1Q01081 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.161e-14■■■□□ 17.3
U2AF1Q01081 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.324e-8■■■□□ 17.3
U2AF1Q01081 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.74e-8■■■□□ 17.3
U2AF1Q01081 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC9.75□□□□□ -0.854e-8■■■□□ 17.3
U2AF1Q01081 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.31■□□□□ 0.361e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-211ENST00000584492 1281 ntTSL 1 (best) BASIC15.54■□□□□ 0.081e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-203ENST00000577867 1211 ntTSL 1 (best)14.94□□□□□ -0.021e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-201ENST00000412816 2031 ntTSL 2 BASIC12.98□□□□□ -0.331e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-204ENST00000578835 674 ntTSL 29.78□□□□□ -0.841e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-207ENST00000581430 556 ntTSL 59.68□□□□□ -0.861e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-206ENST00000581212 721 ntTSL 1 (best)5.39□□□□□ -1.551e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-209ENST00000582862 424 ntTSL 1 (best)5.31□□□□□ -1.561e-7■■■□□ 17.3
U2AF1Q01081 LINC00470-202ENST00000577403 251 ntTSL 1 (best)3.4□□□□□ -1.871e-7■■■□□ 17.3
U2AF1Q01081 LUC7L2-204ENST00000456182 2411 ntTSL 1 (best)24.19■■□□□ 1.467e-7■■■□□ 17.3
U2AF1Q01081 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC24.03■■□□□ 1.447e-7■■■□□ 17.3
U2AF1Q01081 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.237e-7■■■□□ 17.3
U2AF1Q01081 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.4■□□□□ 0.547e-7■■■□□ 17.3
U2AF1Q01081 C7orf55-LUC7L2-201ENST00000541515 1661 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.427e-7■■■□□ 17.3
U2AF1Q01081 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.251e-8■■■□□ 17.3
U2AF1Q01081 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.161e-8■■■□□ 17.3
U2AF1Q01081 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.488e-7■■■□□ 17.3
U2AF1Q01081 DGCR8-202ENST00000383024 4419 ntTSL 5 BASIC15.66■□□□□ 0.18e-7■■■□□ 17.3
U2AF1Q01081 EML4-208ENST00000482660 584 ntTSL 423.73■■□□□ 1.399e-10■■■□□ 17.3
U2AF1Q01081 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC17.16■□□□□ 0.341e-7■■■□□ 17.3
U2AF1Q01081 ABCC4-207ENST00000629385 2903 ntTSL 1 (best) BASIC16.88■□□□□ 0.291e-7■■■□□ 17.3
U2AF1Q01081 TXLNGY-203ENST00000445715 1915 ntBASIC12.73□□□□□ -0.371e-6■■■□□ 17.2
U2AF1Q01081 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.94■■□□□ 1.13e-10■■■□□ 17.2
U2AF1Q01081 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC8.8□□□□□ -13e-10■■■□□ 17.2
U2AF1Q01081 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.62□□□□□ -1.353e-10■■■□□ 17.2
U2AF1Q01081 ASXL1-205ENST00000497249 296 ntTSL 53.76□□□□□ -1.813e-10■■■□□ 17.2
U2AF1Q01081 NET1-203ENST00000449083 637 ntTSL 521.65■■□□□ 1.064e-8■■■□□ 17.2
U2AF1Q01081 SRSF3-201ENST00000339436 1518 ntTSL 217.19■□□□□ 0.342e-15■■■□□ 17.2
U2AF1Q01081 SRSF3-204ENST00000613941 595 ntTSL 413.93□□□□□ -0.182e-15■■■□□ 17.2
U2AF1Q01081 PSMA3-207ENST00000554812 1279 ntTSL 212.07□□□□□ -0.483e-9■■■□□ 17.2
U2AF1Q01081 SGK1-213ENST00000477460 1896 ntTSL 211.85□□□□□ -0.514e-8■■■□□ 17.2
U2AF1Q01081 KIF20B-203ENST00000447580 660 ntTSL 510.76□□□□□ -0.694e-8■■■□□ 17.2
U2AF1Q01081 RCL1-209ENST00000473230 441 ntTSL 39.05□□□□□ -0.962e-15■■■□□ 17.2
U2AF1Q01081 PSMA3-203ENST00000553665 925 ntTSL 28.98□□□□□ -0.973e-9■■■□□ 17.2
U2AF1Q01081 PSMA3-209ENST00000555931 606 ntTSL 48.72□□□□□ -1.013e-9■■■□□ 17.2
U2AF1Q01081 DDX42-217ENST00000584010 3929 ntTSL 28.6□□□□□ -1.039e-12■■■□□ 17.2
U2AF1Q01081 PSMA3-208ENST00000555743 640 ntTSL 28.24□□□□□ -1.093e-9■■■□□ 17.2
U2AF1Q01081 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.113e-9■■■□□ 17.2
U2AF1Q01081 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.27□□□□□ -1.253e-9■■■□□ 17.2
U2AF1Q01081 PSMA3-210ENST00000556321 500 ntTSL 26.48□□□□□ -1.373e-9■■■□□ 17.2
U2AF1Q01081 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.55□□□□□ -1.523e-9■■■□□ 17.2
U2AF1Q01081 DDX42-209ENST00000579511 594 ntTSL 54.98□□□□□ -1.619e-12■■■□□ 17.2
U2AF1Q01081 PSMA3-211ENST00000557087 654 ntTSL 34.72□□□□□ -1.653e-9■■■□□ 17.2
U2AF1Q01081 DDX42-205ENST00000577978 581 ntTSL 53.94□□□□□ -1.789e-12■■■□□ 17.2
U2AF1Q01081 PSMA3-204ENST00000553677 363 ntTSL 53.75□□□□□ -1.813e-9■■■□□ 17.2
U2AF1Q01081 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -24e-8■■■□□ 17.2
U2AF1Q01081 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.31□□□□□ -2.364e-8■■■□□ 17.2
U2AF1Q01081 DOT1L-202ENST00000446286 376 ntTSL 321.79■■□□□ 1.083e-6■■■□□ 17.1
U2AF1Q01081 FTX-207ENST00000602576 574 ntTSL 416.33■□□□□ 0.22e-6■■■□□ 17.1
U2AF1Q01081 FTX-204ENST00000430772 708 ntTSL 59.86□□□□□ -0.832e-6■■■□□ 17.1
U2AF1Q01081 FTX-208ENST00000602776 561 ntTSL 46.28□□□□□ -1.42e-6■■■□□ 17.1
U2AF1Q01081 MARS-227ENST00000552007 434 ntTSL 328.54■■■□□ 2.162e-10■■■□□ 17.1
U2AF1Q01081 MARS-226ENST00000551892 748 ntTSL 328.54■■■□□ 2.162e-10■■■□□ 17.1
U2AF1Q01081 MARS-235ENST00000630803 183 ntTSL 3 BASIC27.56■■■□□ 22e-10■■■□□ 17.1
U2AF1Q01081 MARS-223ENST00000551431 559 ntTSL 425.6■■□□□ 1.692e-10■■■□□ 17.1
U2AF1Q01081 MARS-217ENST00000549074 532 ntTSL 425.6■■□□□ 1.692e-10■■■□□ 17.1
U2AF1Q01081 MARS-208ENST00000547501 510 ntTSL 225.6■■□□□ 1.692e-10■■■□□ 17.1
U2AF1Q01081 MARS-202ENST00000447721 1328 ntTSL 225.16■■□□□ 1.622e-10■■■□□ 17.1
U2AF1Q01081 MARS-221ENST00000550449 739 ntTSL 324.23■■□□□ 1.472e-10■■■□□ 17.1
U2AF1Q01081 MARS-213ENST00000548674 749 ntTSL 520.67■□□□□ 0.92e-10■■■□□ 17.1
U2AF1Q01081 MARS-228ENST00000552371 699 ntTSL 314.39□□□□□ -0.112e-10■■■□□ 17.1
U2AF1Q01081 MARS-231ENST00000553123 724 ntTSL 210.56□□□□□ -0.722e-10■■■□□ 17.1
U2AF1Q01081 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC37.34■■■■□ 3.571e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.421e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-211ENST00000442590 577 ntTSL 316.37■□□□□ 0.211e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-209ENST00000428279 1525 ntTSL 515.54■□□□□ 0.081e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-212ENST00000450319 549 ntTSL 314.17□□□□□ -0.141e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-203ENST00000409589 3544 ntTSL 5 BASIC12.94□□□□□ -0.341e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-208ENST00000424272 2658 ntTSL 5 BASIC10.9□□□□□ -0.671e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-206ENST00000413623 1678 ntTSL 38.73□□□□□ -1.011e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-213ENST00000452403 609 ntTSL 38.21□□□□□ -1.11e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.58□□□□□ -1.21e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.46□□□□□ -1.381e-7■■■□□ 17.1
U2AF1Q01081 IL1R1-210ENST00000430171 709 ntTSL 35.09□□□□□ -1.591e-7■■■□□ 17.1
U2AF1Q01081 CCNL1-209ENST00000467081 564 ntTSL 37.04□□□□□ -1.281e-11■■■□□ 17.1
U2AF1Q01081 CCNL1-205ENST00000464575 505 ntTSL 44.81□□□□□ -1.641e-11■■■□□ 17.1
U2AF1Q01081 SETD5-209ENST00000431285 1824 ntTSL 532■■■□□ 2.715e-8■■■□□ 17.1
U2AF1Q01081 SETD5-212ENST00000450326 921 ntTSL 320.85■□□□□ 0.935e-8■■■□□ 17.1
U2AF1Q01081 SETD5-211ENST00000443339 3478 ntTSL 214.06□□□□□ -0.165e-8■■■□□ 17.1
U2AF1Q01081 CCNL2-220ENST00000505849 1503 ntTSL 221.01■□□□□ 0.952e-29■■■□□ 17.1
U2AF1Q01081 CCNL2-208ENST00000469113 707 ntTSL 318.57■□□□□ 0.562e-29■■■□□ 17.1
Retrieved 100 of 10,096 protein–RNA pairs in 66.6 ms