Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
RAE1P78406 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAE1P78406 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAE1P78406 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RAE1P78406 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAE1P78406 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
RAE1P78406 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RAE1P78406 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RAE1P78406 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.58■□□□□ 0.88
RAE1P78406 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAE1P78406 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.57■□□□□ 0.88
RAE1P78406 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RAE1P78406 AC026471.6-201ENST00000622954 1905 ntBASIC20.57■□□□□ 0.88
RAE1P78406 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAE1P78406 UNC93B3-201ENST00000308076 687 ntBASIC20.57■□□□□ 0.88
RAE1P78406 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RAE1P78406 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.57■□□□□ 0.88
RAE1P78406 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RAE1P78406 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.57■□□□□ 0.88
RAE1P78406 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RAE1P78406 AC087239.1-201ENST00000622671 572 ntBASIC20.57■□□□□ 0.88
RAE1P78406 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
RAE1P78406 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.57■□□□□ 0.88
RAE1P78406 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.57■□□□□ 0.88
RAE1P78406 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.57■□□□□ 0.88
RAE1P78406 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RAE1P78406 OXCT2P1-201ENST00000447263 1535 ntBASIC20.57■□□□□ 0.88
RAE1P78406 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAE1P78406 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RAE1P78406 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAE1P78406 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RAE1P78406 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.56■□□□□ 0.88
RAE1P78406 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
RAE1P78406 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.55■□□□□ 0.88
RAE1P78406 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
RAE1P78406 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.55■□□□□ 0.88
RAE1P78406 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
RAE1P78406 AP005435.1-201ENST00000529293 1178 ntBASIC20.55■□□□□ 0.88
RAE1P78406 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.55■□□□□ 0.88
RAE1P78406 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAE1P78406 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.54■□□□□ 0.88
RAE1P78406 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RAE1P78406 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAE1P78406 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAE1P78406 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RAE1P78406 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.54■□□□□ 0.88
RAE1P78406 MIR4767-201ENST00000582827 78 ntBASIC20.54■□□□□ 0.88
RAE1P78406 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAE1P78406 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAE1P78406 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.54■□□□□ 0.88
RAE1P78406 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAE1P78406 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.53■□□□□ 0.88
RAE1P78406 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.53■□□□□ 0.88
RAE1P78406 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RAE1P78406 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.53■□□□□ 0.88
RAE1P78406 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAE1P78406 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RAE1P78406 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RAE1P78406 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.52■□□□□ 0.88
RAE1P78406 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
RAE1P78406 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
RAE1P78406 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.52■□□□□ 0.88
RAE1P78406 AC024257.2-201ENST00000549699 147 ntBASIC20.52■□□□□ 0.88
RAE1P78406 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.52■□□□□ 0.88
RAE1P78406 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RAE1P78406 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RAE1P78406 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.51■□□□□ 0.87
RAE1P78406 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.51■□□□□ 0.87
RAE1P78406 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 AL136162.1-201ENST00000607711 1078 ntBASIC20.51■□□□□ 0.87
RAE1P78406 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 AC026310.3-201ENST00000625186 2373 ntBASIC20.51■□□□□ 0.87
RAE1P78406 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RAE1P78406 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms