Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC22.69■■□□□ 1.22
VCANP13611 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC22.69■■□□□ 1.22
VCANP13611 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.69■■□□□ 1.22
VCANP13611 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.69■■□□□ 1.22
VCANP13611 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
VCANP13611 TMPOP1-202ENST00000424642 1267 ntBASIC22.69■■□□□ 1.22
VCANP13611 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.69■■□□□ 1.22
VCANP13611 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.69■■□□□ 1.22
VCANP13611 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
VCANP13611 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.69■■□□□ 1.22
VCANP13611 AC010501.1-201ENST00000606270 1962 ntBASIC22.69■■□□□ 1.22
VCANP13611 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
VCANP13611 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.69■■□□□ 1.22
VCANP13611 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
VCANP13611 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.69■■□□□ 1.22
VCANP13611 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
VCANP13611 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.68■■□□□ 1.22
VCANP13611 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.68■■□□□ 1.22
VCANP13611 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
VCANP13611 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.68■■□□□ 1.22
VCANP13611 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
VCANP13611 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
VCANP13611 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VCANP13611 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VCANP13611 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.67■■□□□ 1.22
VCANP13611 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.67■■□□□ 1.22
VCANP13611 AC013268.1-206ENST00000638368 961 ntBASIC22.67■■□□□ 1.22
VCANP13611 AC112229.1-201ENST00000639295 961 ntBASIC22.67■■□□□ 1.22
VCANP13611 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.67■■□□□ 1.22
VCANP13611 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.67■■□□□ 1.22
VCANP13611 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.67■■□□□ 1.22
VCANP13611 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC22.67■■□□□ 1.22
VCANP13611 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VCANP13611 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VCANP13611 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.66■■□□□ 1.22
VCANP13611 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VCANP13611 AC007322.4-201ENST00000509611 723 ntBASIC22.66■■□□□ 1.22
VCANP13611 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.66■■□□□ 1.22
VCANP13611 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VCANP13611 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC22.66■■□□□ 1.22
VCANP13611 AL359736.2-201ENST00000621992 437 ntBASIC22.66■■□□□ 1.22
VCANP13611 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VCANP13611 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.65■■□□□ 1.22
VCANP13611 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.65■■□□□ 1.22
VCANP13611 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.65■■□□□ 1.22
VCANP13611 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
VCANP13611 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
VCANP13611 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
VCANP13611 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
VCANP13611 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
VCANP13611 AC008403.3-201ENST00000598924 454 ntBASIC22.64■■□□□ 1.22
VCANP13611 AC133561.5-201ENST00000635547 218 ntBASIC22.64■■□□□ 1.22
VCANP13611 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.64■■□□□ 1.22
VCANP13611 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VCANP13611 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
VCANP13611 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.64■■□□□ 1.21
VCANP13611 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.64■■□□□ 1.21
VCANP13611 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.64■■□□□ 1.21
VCANP13611 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
VCANP13611 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.64■■□□□ 1.21
VCANP13611 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
VCANP13611 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.64■■□□□ 1.21
VCANP13611 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.63■■□□□ 1.21
VCANP13611 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
VCANP13611 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.63■■□□□ 1.21
VCANP13611 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VCANP13611 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.63■■□□□ 1.21
VCANP13611 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC22.63■■□□□ 1.21
VCANP13611 CD177P1-201ENST00000606252 935 ntBASIC22.63■■□□□ 1.21
VCANP13611 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.63■■□□□ 1.21
VCANP13611 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.62■■□□□ 1.21
VCANP13611 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.62■■□□□ 1.21
VCANP13611 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.62■■□□□ 1.21
VCANP13611 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
VCANP13611 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.62■■□□□ 1.21
VCANP13611 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
VCANP13611 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms