Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SNX3O60493 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.32■■□□□ 1
SNX3O60493 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
SNX3O60493 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SNX3O60493 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SNX3O60493 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SNX3O60493 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SNX3O60493 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX3O60493 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX3O60493 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.3■■□□□ 1
SNX3O60493 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX3O60493 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SNX3O60493 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.3■■□□□ 1
SNX3O60493 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SNX3O60493 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SNX3O60493 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX3O60493 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SNX3O60493 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.3■■□□□ 1
SNX3O60493 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.3■■□□□ 1
SNX3O60493 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.29■■□□□ 1
SNX3O60493 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SNX3O60493 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.29■■□□□ 1
SNX3O60493 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.29■■□□□ 1
SNX3O60493 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.29■■□□□ 1
SNX3O60493 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SNX3O60493 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 AL592293.1-201ENST00000502889 1188 ntBASIC21.29■■□□□ 1
SNX3O60493 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.29■■□□□ 1
SNX3O60493 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
SNX3O60493 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.29■■□□□ 1
SNX3O60493 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.29■■□□□ 1
SNX3O60493 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SNX3O60493 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.29■■□□□ 1
SNX3O60493 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SNX3O60493 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.28■■□□□ 1
SNX3O60493 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SNX3O60493 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNX3O60493 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
SNX3O60493 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.28■■□□□ 1
SNX3O60493 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.28■■□□□ 1
SNX3O60493 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNX3O60493 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.28■■□□□ 1
SNX3O60493 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
SNX3O60493 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
SNX3O60493 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
SNX3O60493 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.27■■□□□ 1
SNX3O60493 FP325331.1-202ENST00000623531 1380 ntBASIC21.27■■□□□ 1
SNX3O60493 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.27■■□□□ 1
SNX3O60493 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SNX3O60493 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.27■■□□□ 1
SNX3O60493 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
SNX3O60493 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.27■□□□□ 0.99
SNX3O60493 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SNX3O60493 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX3O60493 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX3O60493 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.26■□□□□ 0.99
SNX3O60493 AC009086.3-201ENST00000623486 1008 ntBASIC21.26■□□□□ 0.99
SNX3O60493 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX3O60493 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX3O60493 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNX3O60493 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.25■□□□□ 0.99
SNX3O60493 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.25■□□□□ 0.99
SNX3O60493 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SNX3O60493 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SNX3O60493 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
SNX3O60493 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SNX3O60493 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNX3O60493 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.25■□□□□ 0.99
SNX3O60493 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.25■□□□□ 0.99
SNX3O60493 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms