Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 AC079140.4-201ENST00000507448 529 ntBASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 AC011767.1-201ENST00000617410 1153 ntBASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NKX2-6A6NCS4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ESRRAP2-201ENST00000418437 1549 ntBASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ABCB10P4-201ENST00000566803 2184 ntBASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 MIR663A-201ENST00000385250 93 ntBASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
NKX2-6A6NCS4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.19■□□□□ 0.66
NKX2-6A6NCS4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX2-6A6NCS4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
NKX2-6A6NCS4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 OXCT2P1-201ENST00000447263 1535 ntBASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 KRT18P11-201ENST00000435214 1283 ntBASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 NCF1B-203ENST00000435988 1254 ntBASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX2-6A6NCS4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX2-6A6NCS4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX2-6A6NCS4 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX2-6A6NCS4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
NKX2-6A6NCS4 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX2-6A6NCS4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms