Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 LSC2YGR244C 1284 nt9.09□□□□□ -0.95
CUP9P41817 SAM1YLR180W 1149 nt9.09□□□□□ -0.95
CUP9P41817 FUR4YBR021W 1902 nt9.09□□□□□ -0.95
CUP9P41817 YCL074WYCL074W 927 nt9.08□□□□□ -0.96
CUP9P41817 RAD23YEL037C 1197 nt9.08□□□□□ -0.96
CUP9P41817 AQY2YLL052C 450 nt9.08□□□□□ -0.96
CUP9P41817 POM34YLR018C 900 nt9.08□□□□□ -0.96
CUP9P41817 TOM6YOR045W 186 nt9.08□□□□□ -0.96
CUP9P41817 HIP1YGR191W 1812 nt9.05□□□□□ -0.96
CUP9P41817 UME6YDR207C 2511 nt9.05□□□□□ -0.96
CUP9P41817 TSC10YBR265W 963 nt9.05□□□□□ -0.96
CUP9P41817 PEX2YJL210W 816 nt9.04□□□□□ -0.96
CUP9P41817 NRT1YOR071C 1797 nt9.04□□□□□ -0.96
CUP9P41817 RDN18-1RDN18-1 1800 nt9.03□□□□□ -0.96
CUP9P41817 RDN18-2RDN18-2 1800 nt9.03□□□□□ -0.96
CUP9P41817 PRO1YDR300C 1287 nt9.02□□□□□ -0.97
CUP9P41817 MET28YIR017C 564 nt9.01□□□□□ -0.97
CUP9P41817 YGR012WYGR012W 1182 nt9□□□□□ -0.97
CUP9P41817 ATG15YCR068W 1563 nt8.99□□□□□ -0.97
CUP9P41817 TIF6YPR016C 738 nt8.99□□□□□ -0.97
CUP9P41817 ARP6YLR085C 1317 nt8.99□□□□□ -0.97
CUP9P41817 YLR437C-AYLR437C-A 228 nt8.98□□□□□ -0.97
CUP9P41817 RIB3YDR487C 627 nt8.97□□□□□ -0.97
CUP9P41817 FIT3YOR383C 615 nt8.95□□□□□ -0.98
CUP9P41817 RTN2YDL204W 1182 nt8.94□□□□□ -0.98
CUP9P41817 YLR279WYLR279W 390 nt8.92□□□□□ -0.98
CUP9P41817 GAP1YKR039W 1809 nt8.91□□□□□ -0.98
CUP9P41817 PRP4YPR178W 1398 nt8.91□□□□□ -0.98
CUP9P41817 CAB5YDR196C 726 nt8.9□□□□□ -0.98
CUP9P41817 DPS1YLL018C 1674 nt8.88□□□□□ -0.99
CUP9P41817 YKR005CYKR005C 1578 nt8.87□□□□□ -0.99
CUP9P41817 YPL222C-AYPL222C-A 246 nt8.87□□□□□ -0.99
CUP9P41817 MSB4YOL112W 1479 nt8.86□□□□□ -0.99
CUP9P41817 PLB1YMR008C 1995 nt8.86□□□□□ -0.99
CUP9P41817 ALG12YNR030W 1656 nt8.85□□□□□ -0.99
CUP9P41817 YAR028WYAR028W 705 nt8.81□□□□□ -1
CUP9P41817 AAC1YMR056C 930 nt8.81□□□□□ -1
CUP9P41817 STE4YOR212W 1272 nt8.81□□□□□ -1
CUP9P41817 RAD51YER095W 1203 nt8.8□□□□□ -1
CUP9P41817 YPI1YFR003C 468 nt8.8□□□□□ -1
CUP9P41817 YGR259CYGR259C 441 nt8.8□□□□□ -1
CUP9P41817 FUN14YAL008W 597 nt8.8□□□□□ -1
CUP9P41817 YJL195CYJL195C 702 nt8.8□□□□□ -1
CUP9P41817 BMT6YLR063W 1098 nt8.8□□□□□ -1
CUP9P41817 DIF1YLR437C 402 nt8.8□□□□□ -1
CUP9P41817 ALP1YNL270C 1722 nt8.8□□□□□ -1
CUP9P41817 SNF1YDR477W 1902 nt8.78□□□□□ -1
CUP9P41817 YLR349WYLR349W 507 nt8.77□□□□□ -1.01
CUP9P41817 ADH1YOL086C 1047 nt8.77□□□□□ -1.01
CUP9P41817 GND1YHR183W 1470 nt8.77□□□□□ -1.01
CUP9P41817 Q0182Q0182 405 nt8.75□□□□□ -1.01
CUP9P41817 LOT5YKL183W 921 nt8.75□□□□□ -1.01
CUP9P41817 UTR1YJR049C 1593 nt8.74□□□□□ -1.01
CUP9P41817 AKR2YOR034C 2250 nt8.74□□□□□ -1.01
CUP9P41817 MTG2YHR168W 1557 nt8.73□□□□□ -1.01
CUP9P41817 YNR029CYNR029C 1290 nt8.73□□□□□ -1.01
CUP9P41817 ZTA1YBR046C 1005 nt8.72□□□□□ -1.01
CUP9P41817 SAM35YHR083W 990 nt8.71□□□□□ -1.02
CUP9P41817 IRC24YIR036C 792 nt8.71□□□□□ -1.02
CUP9P41817 BIO5YNR056C 1686 nt8.7□□□□□ -1.02
CUP9P41817 ADH7YCR105W 1086 nt8.69□□□□□ -1.02
CUP9P41817 MCH5YOR306C 1566 nt8.68□□□□□ -1.02
CUP9P41817 YEL008WYEL008W 381 nt8.67□□□□□ -1.02
CUP9P41817 FCY21YER060W 1587 nt8.67□□□□□ -1.02
CUP9P41817 RPM1RPM1 483 nt8.66□□□□□ -1.02
CUP9P41817 SMM1YNR015W 1155 nt8.66□□□□□ -1.02
CUP9P41817 APT2YDR441C 546 nt8.65□□□□□ -1.02
CUP9P41817 PAU15YIR041W 375 nt8.65□□□□□ -1.02
CUP9P41817 SED1YDR077W 1017 nt8.64□□□□□ -1.03
CUP9P41817 LSB3YFR024C-A 1380 nt8.63□□□□□ -1.03
CUP9P41817 PRM5YIL117C 957 nt8.61□□□□□ -1.03
CUP9P41817 PBP1YGR178C 2169 nt8.61□□□□□ -1.03
CUP9P41817 NAR1YNL240C 1476 nt8.6□□□□□ -1.03
CUP9P41817 CPD1YGR247W 720 nt8.6□□□□□ -1.03
CUP9P41817 GPN2YOR262W 1044 nt8.59□□□□□ -1.03
CUP9P41817 LIP1YMR298W 453 nt8.58□□□□□ -1.04
CUP9P41817 YER190C-AYER190C-A 576 nt8.57□□□□□ -1.04
CUP9P41817 YGR296C-AYGR296C-A 576 nt8.57□□□□□ -1.04
CUP9P41817 PRY1YJL079C 900 nt8.57□□□□□ -1.04
CUP9P41817 YML133W-AYML133W-A 576 nt8.57□□□□□ -1.04
CUP9P41817 YNL339W-AYNL339W-A 576 nt8.57□□□□□ -1.04
CUP9P41817 YPL283W-AYPL283W-A 576 nt8.57□□□□□ -1.04
CUP9P41817 HXT12YIL170W 1374 nt8.57□□□□□ -1.04
CUP9P41817 RIB2YOL066C 1776 nt8.56□□□□□ -1.04
CUP9P41817 UGA4YDL210W 1716 nt8.55□□□□□ -1.04
CUP9P41817 VRG4YGL225W 1014 nt8.53□□□□□ -1.04
CUP9P41817 DBP1YPL119C 1854 nt8.52□□□□□ -1.05
CUP9P41817 ESS1YJR017C 513 nt8.52□□□□□ -1.05
CUP9P41817 CYT2YKL087C 675 nt8.52□□□□□ -1.05
CUP9P41817 ALD4YOR374W 1560 nt8.52□□□□□ -1.05
CUP9P41817 tS(GCU)LtS(GCU)L 80 nt8.51□□□□□ -1.05
CUP9P41817 YPL251WYPL251W 303 nt8.5□□□□□ -1.05
CUP9P41817 HXT1YHR094C 1713 nt8.49□□□□□ -1.05
CUP9P41817 LEU9YOR108W 1815 nt8.47□□□□□ -1.05
CUP9P41817 YBL086CYBL086C 1401 nt8.47□□□□□ -1.05
CUP9P41817 BRR1YPR057W 1026 nt8.47□□□□□ -1.05
CUP9P41817 MEP3YPR138C 1470 nt8.46□□□□□ -1.05
CUP9P41817 YJL055WYJL055W 738 nt8.44□□□□□ -1.06
CUP9P41817 TOA2YKL058W 369 nt8.44□□□□□ -1.06
CUP9P41817 CSM1YCR086W 573 nt8.43□□□□□ -1.06
Retrieved 100 of 7,029 protein–RNA pairs in 73.9 ms