Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL1P09341 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL1P09341 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL1P09341 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL1P09341 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.15■□□□□ 0.98
CXCL1P09341 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CXCL1P09341 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.14■□□□□ 0.97
CXCL1P09341 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL1P09341 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.09■□□□□ 0.97
CXCL1P09341 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL1P09341 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL1P09341 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CXCL1P09341 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL1P09341 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.05■□□□□ 0.96
CXCL1P09341 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CXCL1P09341 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL1P09341 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL1P09341 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL1P09341 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.02■□□□□ 0.96
CXCL1P09341 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.02■□□□□ 0.96
CXCL1P09341 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.02■□□□□ 0.95
CXCL1P09341 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.01■□□□□ 0.95
CXCL1P09341 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
CXCL1P09341 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL1P09341 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL1P09341 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL1P09341 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC21■□□□□ 0.95
CXCL1P09341 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CXCL1P09341 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.98■□□□□ 0.95
CXCL1P09341 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.98■□□□□ 0.95
CXCL1P09341 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL1P09341 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL1P09341 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.96■□□□□ 0.95
CXCL1P09341 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CXCL1P09341 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.95■□□□□ 0.94
CXCL1P09341 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.95■□□□□ 0.94
CXCL1P09341 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CXCL1P09341 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL1P09341 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL1P09341 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 AC142086.6-201ENST00000621154 1765 ntBASIC20.9■□□□□ 0.94
CXCL1P09341 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL1P09341 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL1P09341 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CXCL1P09341 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL1P09341 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL1P09341 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.87■□□□□ 0.93
CXCL1P09341 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL1P09341 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL1P09341 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL1P09341 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.85■□□□□ 0.93
CXCL1P09341 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL1P09341 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CXCL1P09341 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CXCL1P09341 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL1P09341 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL1P09341 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.82■□□□□ 0.92
CXCL1P09341 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL1P09341 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL1P09341 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL1P09341 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 AC120057.4-201ENST00000624722 1615 ntBASIC20.8■□□□□ 0.92
CXCL1P09341 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.8■□□□□ 0.92
CXCL1P09341 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CXCL1P09341 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CXCL1P09341 AL121749.1-202ENST00000609313 2153 ntBASIC20.77■□□□□ 0.92
CXCL1P09341 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL1P09341 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL1P09341 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CXCL1P09341 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CXCL1P09341 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.76■□□□□ 0.91
CXCL1P09341 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.76■□□□□ 0.91
CXCL1P09341 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL1P09341 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL1P09341 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms