Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQA1P01909 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DQA1P01909 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQA1P01909 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DQA1P01909 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DQA1P01909 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.41■□□□□ 0.86
HLA-DQA1P01909 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DQA1P01909 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HLA-DQA1P01909 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.39■□□□□ 0.86
HLA-DQA1P01909 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DQA1P01909 AC120057.4-201ENST00000624722 1615 ntBASIC20.38■□□□□ 0.85
HLA-DQA1P01909 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DQA1P01909 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
HLA-DQA1P01909 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DQA1P01909 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
HLA-DQA1P01909 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DQA1P01909 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DQA1P01909 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HLA-DQA1P01909 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
HLA-DQA1P01909 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HLA-DQA1P01909 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.35■□□□□ 0.85
HLA-DQA1P01909 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DQA1P01909 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DQA1P01909 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DQA1P01909 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DQA1P01909 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DQA1P01909 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DQA1P01909 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DQA1P01909 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.33■□□□□ 0.85
HLA-DQA1P01909 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DQA1P01909 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.31■□□□□ 0.84
HLA-DQA1P01909 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DQA1P01909 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DQA1P01909 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DQA1P01909 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DQA1P01909 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DQA1P01909 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DQA1P01909 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DQA1P01909 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DQA1P01909 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HLA-DQA1P01909 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.27■□□□□ 0.84
HLA-DQA1P01909 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DQA1P01909 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DQA1P01909 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DQA1P01909 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DQA1P01909 AC142086.6-201ENST00000621154 1765 ntBASIC20.23■□□□□ 0.83
HLA-DQA1P01909 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DQA1P01909 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HLA-DQA1P01909 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.22■□□□□ 0.83
HLA-DQA1P01909 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.21■□□□□ 0.83
HLA-DQA1P01909 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DQA1P01909 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DQA1P01909 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HLA-DQA1P01909 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DQA1P01909 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HLA-DQA1P01909 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.2■□□□□ 0.82
HLA-DQA1P01909 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HLA-DQA1P01909 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DQA1P01909 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DQA1P01909 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HLA-DQA1P01909 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HLA-DQA1P01909 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DQA1P01909 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DQA1P01909 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DQA1P01909 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HLA-DQA1P01909 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.16■□□□□ 0.82
HLA-DQA1P01909 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HLA-DQA1P01909 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HLA-DQA1P01909 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.15■□□□□ 0.82
HLA-DQA1P01909 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.14■□□□□ 0.81
HLA-DQA1P01909 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DQA1P01909 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DQA1P01909 AC135731.1-201ENST00000569415 2548 ntBASIC20.13■□□□□ 0.81
HLA-DQA1P01909 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
HLA-DQA1P01909 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DQA1P01909 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DQA1P01909 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DQA1P01909 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DQA1P01909 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.11■□□□□ 0.81
HLA-DQA1P01909 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DQA1P01909 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.1■□□□□ 0.81
HLA-DQA1P01909 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DQA1P01909 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DQA1P01909 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
HLA-DQA1P01909 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.09■□□□□ 0.81
HLA-DQA1P01909 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HLA-DQA1P01909 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HLA-DQA1P01909 ST7-AS1-201ENST00000456775 1889 ntBASIC20.09■□□□□ 0.81
HLA-DQA1P01909 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HLA-DQA1P01909 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HLA-DQA1P01909 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HLA-DQA1P01909 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HLA-DQA1P01909 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DQA1P01909 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms