Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 AC079089.2-201ENST00000531211 1277 ntBASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHA3Q9Y5H8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 AC099791.2-201ENST00000605725 427 ntBASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
PCDHA3Q9Y5H8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 AL356740.2-201ENST00000601559 647 ntBASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 AL035685.1-201ENST00000636663 812 ntBASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.66■■□□□ 1.22
PCDHA3Q9Y5H8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 MIR3621-201ENST00000580529 85 ntBASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHA3Q9Y5H8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHA3Q9Y5H8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.64■■□□□ 1.21
PCDHA3Q9Y5H8 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 GUSBP5-201ENST00000418136 578 ntBASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.63■■□□□ 1.21
PCDHA3Q9Y5H8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 MIR3181-201ENST00000578512 73 ntBASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHA3Q9Y5H8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms