Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PIF1Q9H611 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.61■□□□□ 0.89
PIF1Q9H611 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
PIF1Q9H611 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.61■□□□□ 0.89
PIF1Q9H611 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.61■□□□□ 0.89
PIF1Q9H611 AC009086.3-201ENST00000623486 1008 ntBASIC20.61■□□□□ 0.89
PIF1Q9H611 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.61■□□□□ 0.89
PIF1Q9H611 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PIF1Q9H611 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PIF1Q9H611 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
PIF1Q9H611 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PIF1Q9H611 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.6■□□□□ 0.89
PIF1Q9H611 BX664725.1-201ENST00000438252 379 ntBASIC20.6■□□□□ 0.89
PIF1Q9H611 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PIF1Q9H611 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PIF1Q9H611 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.6■□□□□ 0.89
PIF1Q9H611 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.6■□□□□ 0.89
PIF1Q9H611 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.6■□□□□ 0.89
PIF1Q9H611 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.6■□□□□ 0.89
PIF1Q9H611 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PIF1Q9H611 SLC25A24-204ENST00000569674 2357 ntBASIC20.59■□□□□ 0.89
PIF1Q9H611 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.59■□□□□ 0.89
PIF1Q9H611 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.59■□□□□ 0.89
PIF1Q9H611 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
PIF1Q9H611 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.59■□□□□ 0.89
PIF1Q9H611 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PIF1Q9H611 DUX4L4-201ENST00000566884 1269 ntBASIC20.59■□□□□ 0.89
PIF1Q9H611 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.59■□□□□ 0.89
PIF1Q9H611 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.59■□□□□ 0.89
PIF1Q9H611 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.59■□□□□ 0.89
PIF1Q9H611 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PIF1Q9H611 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.59■□□□□ 0.89
PIF1Q9H611 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PIF1Q9H611 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
PIF1Q9H611 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PIF1Q9H611 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.59■□□□□ 0.89
PIF1Q9H611 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.58■□□□□ 0.89
PIF1Q9H611 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.58■□□□□ 0.89
PIF1Q9H611 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.58■□□□□ 0.89
PIF1Q9H611 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.58■□□□□ 0.89
PIF1Q9H611 MIR6722-201ENST00000617286 78 ntBASIC20.58■□□□□ 0.89
PIF1Q9H611 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PIF1Q9H611 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.58■□□□□ 0.89
PIF1Q9H611 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
PIF1Q9H611 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PIF1Q9H611 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PIF1Q9H611 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
PIF1Q9H611 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.57■□□□□ 0.88
PIF1Q9H611 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.57■□□□□ 0.88
PIF1Q9H611 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 AL451085.2-201ENST00000605085 799 ntBASIC20.57■□□□□ 0.88
PIF1Q9H611 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.57■□□□□ 0.88
PIF1Q9H611 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.57■□□□□ 0.88
PIF1Q9H611 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.57■□□□□ 0.88
PIF1Q9H611 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PIF1Q9H611 AC021242.3-201ENST00000607598 1377 ntBASIC20.57■□□□□ 0.88
PIF1Q9H611 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms