Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 AC009102.2-201ENST00000606772 1639 ntBASIC22.08■■□□□ 1.13
CDC42EP4Q9H3Q1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CDC42EP4Q9H3Q1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.12
CDC42EP4Q9H3Q1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CDC42EP4Q9H3Q1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
CDC42EP4Q9H3Q1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 FEM1AP4-201ENST00000443167 1987 ntBASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 AC021242.3-201ENST00000607598 1377 ntBASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CDC42EP4Q9H3Q1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 YBX1P4-201ENST00000392794 808 ntBASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.06■■□□□ 1.12
CDC42EP4Q9H3Q1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC22.05■■□□□ 1.12
CDC42EP4Q9H3Q1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDC42EP4Q9H3Q1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 AL031848.2-201ENST00000607670 837 ntBASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CDC42EP4Q9H3Q1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDC42EP4Q9H3Q1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDC42EP4Q9H3Q1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CDC42EP4Q9H3Q1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CDC42EP4Q9H3Q1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDC42EP4Q9H3Q1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.02■■□□□ 1.11
CDC42EP4Q9H3Q1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CDC42EP4Q9H3Q1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms