Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC28BQ9BUN5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC28BQ9BUN5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC28BQ9BUN5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC28BQ9BUN5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC28BQ9BUN5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 Z98882.1-201ENST00000622160 2253 ntBASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC28BQ9BUN5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CCDC28BQ9BUN5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 TSPY13P-201ENST00000338964 914 ntBASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC28BQ9BUN5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC28BQ9BUN5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.95
CCDC28BQ9BUN5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC28BQ9BUN5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC28BQ9BUN5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 AC103834.1-201ENST00000520383 144 ntBASIC21■□□□□ 0.95
CCDC28BQ9BUN5 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC28BQ9BUN5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC28BQ9BUN5 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms