Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USB1Q9BQ65 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USB1Q9BQ65 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.21■□□□□ 0.67
USB1Q9BQ65 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USB1Q9BQ65 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.21■□□□□ 0.67
USB1Q9BQ65 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 AC004687.1-201ENST00000579003 1625 ntBASIC19.2■□□□□ 0.66
USB1Q9BQ65 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USB1Q9BQ65 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USB1Q9BQ65 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USB1Q9BQ65 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USB1Q9BQ65 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.19■□□□□ 0.66
USB1Q9BQ65 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AC010141.3-201ENST00000456659 717 ntBASIC19.18■□□□□ 0.66
USB1Q9BQ65 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 AL031602.1-201ENST00000633169 911 ntBASIC19.18■□□□□ 0.66
USB1Q9BQ65 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USB1Q9BQ65 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USB1Q9BQ65 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 AC034268.1-201ENST00000441047 882 ntBASIC19.17■□□□□ 0.66
USB1Q9BQ65 AC105233.4-201ENST00000642045 216 ntBASIC19.17■□□□□ 0.66
USB1Q9BQ65 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USB1Q9BQ65 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USB1Q9BQ65 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USB1Q9BQ65 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.16■□□□□ 0.66
USB1Q9BQ65 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.16■□□□□ 0.66
USB1Q9BQ65 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USB1Q9BQ65 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 AC104564.3-201ENST00000582367 638 ntBASIC19.16■□□□□ 0.66
USB1Q9BQ65 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USB1Q9BQ65 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USB1Q9BQ65 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
USB1Q9BQ65 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USB1Q9BQ65 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USB1Q9BQ65 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USB1Q9BQ65 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.15■□□□□ 0.66
USB1Q9BQ65 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
USB1Q9BQ65 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.15■□□□□ 0.66
USB1Q9BQ65 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms