Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 MIR939-201ENST00000401314 82 ntBASIC20.65■□□□□ 0.9
VMP1Q96GC9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.65■□□□□ 0.9
VMP1Q96GC9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.65■□□□□ 0.9
VMP1Q96GC9 AC027682.1-201ENST00000562846 899 ntBASIC20.65■□□□□ 0.9
VMP1Q96GC9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VMP1Q96GC9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 ANOS2P-203ENST00000472227 1816 ntBASIC20.64■□□□□ 0.9
VMP1Q96GC9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
VMP1Q96GC9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.64■□□□□ 0.89
VMP1Q96GC9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VMP1Q96GC9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.64■□□□□ 0.89
VMP1Q96GC9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VMP1Q96GC9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.64■□□□□ 0.89
VMP1Q96GC9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
VMP1Q96GC9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VMP1Q96GC9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VMP1Q96GC9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
VMP1Q96GC9 BX842568.3-201ENST00000418104 571 ntBASIC20.63■□□□□ 0.89
VMP1Q96GC9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 AC091305.1-201ENST00000479476 895 ntBASIC20.63■□□□□ 0.89
VMP1Q96GC9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 AL136967.2-201ENST00000623968 743 ntBASIC20.63■□□□□ 0.89
VMP1Q96GC9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VMP1Q96GC9 AC092068.2-201ENST00000590491 1708 ntBASIC20.63■□□□□ 0.89
VMP1Q96GC9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VMP1Q96GC9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VMP1Q96GC9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VMP1Q96GC9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VMP1Q96GC9 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.62■□□□□ 0.89
VMP1Q96GC9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 AL137060.1-201ENST00000618151 2648 ntBASIC20.62■□□□□ 0.89
VMP1Q96GC9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.62■□□□□ 0.89
VMP1Q96GC9 AC008764.7-201ENST00000593779 1081 ntBASIC20.62■□□□□ 0.89
VMP1Q96GC9 AC233992.3-201ENST00000607491 485 ntBASIC20.62■□□□□ 0.89
VMP1Q96GC9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VMP1Q96GC9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 AL121603.2-201ENST00000557373 2117 ntBASIC20.62■□□□□ 0.89
VMP1Q96GC9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VMP1Q96GC9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VMP1Q96GC9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VMP1Q96GC9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VMP1Q96GC9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VMP1Q96GC9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
VMP1Q96GC9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 RASA4CP-201ENST00000424092 1398 ntBASIC20.6■□□□□ 0.89
VMP1Q96GC9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VMP1Q96GC9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VMP1Q96GC9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 AC099791.1-201ENST00000416440 715 ntBASIC20.59■□□□□ 0.89
VMP1Q96GC9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 OR2I1P-207ENST00000453522 948 ntBASIC20.59■□□□□ 0.89
VMP1Q96GC9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms