Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.99
LMX1AQ8TE12 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 LINC01960-201ENST00000563759 1884 ntBASIC21.2■□□□□ 0.98
LMX1AQ8TE12 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 CDCA4P2-201ENST00000441182 718 ntBASIC21.2■□□□□ 0.98
LMX1AQ8TE12 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.2■□□□□ 0.98
LMX1AQ8TE12 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1AQ8TE12 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 HLA-L-209ENST00000420110 1011 ntBASIC21.18■□□□□ 0.98
LMX1AQ8TE12 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1AQ8TE12 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1AQ8TE12 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 AC026185.1-201ENST00000445748 174 ntBASIC21.16■□□□□ 0.98
LMX1AQ8TE12 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 AC079089.2-201ENST00000531211 1277 ntBASIC21.16■□□□□ 0.98
LMX1AQ8TE12 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.16■□□□□ 0.98
LMX1AQ8TE12 RAP2CP1-201ENST00000605103 478 ntBASIC21.16■□□□□ 0.98
LMX1AQ8TE12 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.16■□□□□ 0.98
LMX1AQ8TE12 KRT87P-202ENST00000534226 1464 ntBASIC21.15■□□□□ 0.98
LMX1AQ8TE12 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LMX1AQ8TE12 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LMX1AQ8TE12 KRT18P11-201ENST00000435214 1283 ntBASIC21.15■□□□□ 0.98
LMX1AQ8TE12 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.15■□□□□ 0.98
LMX1AQ8TE12 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LMX1AQ8TE12 AC104187.1-201ENST00000607510 612 ntBASIC21.15■□□□□ 0.98
LMX1AQ8TE12 AC011767.1-201ENST00000617410 1153 ntBASIC21.15■□□□□ 0.98
LMX1AQ8TE12 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
LMX1AQ8TE12 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LMX1AQ8TE12 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LMX1AQ8TE12 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
LMX1AQ8TE12 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LMX1AQ8TE12 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LMX1AQ8TE12 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
LMX1AQ8TE12 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms