Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN3Q8NCR9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 MIR6090-201ENST00000622481 60 ntBASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN3Q8NCR9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.28■□□□□ 0.36
CLRN3Q8NCR9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 DUX4L28-201ENST00000623687 678 ntBASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN3Q8NCR9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN3Q8NCR9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN3Q8NCR9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.27■□□□□ 0.35
CLRN3Q8NCR9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN3Q8NCR9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN3Q8NCR9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 FEM1AP1-201ENST00000431297 1995 ntBASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN3Q8NCR9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 AC098818.2-201ENST00000564925 2320 ntBASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.25■□□□□ 0.35
CLRN3Q8NCR9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLRN3Q8NCR9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLRN3Q8NCR9 SMG8-203ENST00000578922 2178 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms