Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00643Q86TS7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 BCL2-203ENST00000589955 5011 ntBASIC13.62□□□□□ -0.23
LINC00643Q86TS7 SMG8-203ENST00000578922 2178 ntBASIC13.62□□□□□ -0.23
LINC00643Q86TS7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00643Q86TS7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 FEM1AP1-201ENST00000431297 1995 ntBASIC13.61□□□□□ -0.23
LINC00643Q86TS7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 AC120498.9-201ENST00000339021 3867 ntBASIC13.61□□□□□ -0.23
LINC00643Q86TS7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00643Q86TS7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC13.6□□□□□ -0.23
LINC00643Q86TS7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00643Q86TS7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
LINC00643Q86TS7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
LINC00643Q86TS7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
LINC00643Q86TS7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
LINC00643Q86TS7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
LINC00643Q86TS7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00643Q86TS7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms