Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PPP4R4Q6NUP7 AC005229.4-201ENST00000610085 2198 ntBASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PPP4R4Q6NUP7 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PPP4R4Q6NUP7 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.64■□□□□ 0.9
PPP4R4Q6NUP7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PPP4R4Q6NUP7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PPP4R4Q6NUP7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PPP4R4Q6NUP7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.64■□□□□ 0.9
PPP4R4Q6NUP7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 SNX5-217ENST00000606557 1087 ntBASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.64■□□□□ 0.89
PPP4R4Q6NUP7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 AC131274.2-201ENST00000580697 1507 ntBASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 AC138932.1-201ENST00000534164 6830 ntBASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 AL353803.4-201ENST00000565882 1934 ntBASIC20.63■□□□□ 0.89
PPP4R4Q6NUP7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PPP4R4Q6NUP7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PPP4R4Q6NUP7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms