Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
USF3Q68DE3 AP004607.4-201ENST00000530158 1459 ntBASIC18.64■□□□□ 0.58
USF3Q68DE3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF3Q68DE3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.64■□□□□ 0.57
USF3Q68DE3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
USF3Q68DE3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.64■□□□□ 0.57
USF3Q68DE3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF3Q68DE3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF3Q68DE3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.64■□□□□ 0.57
USF3Q68DE3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF3Q68DE3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USF3Q68DE3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USF3Q68DE3 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.64■□□□□ 0.57
USF3Q68DE3 HLA-L-209ENST00000420110 1011 ntBASIC18.64■□□□□ 0.57
USF3Q68DE3 AC026185.1-201ENST00000445748 174 ntBASIC18.64■□□□□ 0.57
USF3Q68DE3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.64■□□□□ 0.57
USF3Q68DE3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.64■□□□□ 0.57
USF3Q68DE3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.64■□□□□ 0.57
USF3Q68DE3 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.64■□□□□ 0.57
USF3Q68DE3 LINC02228-203ENST00000641970 1355 ntBASIC18.63■□□□□ 0.57
USF3Q68DE3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.63■□□□□ 0.57
USF3Q68DE3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.63■□□□□ 0.57
USF3Q68DE3 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.63■□□□□ 0.57
USF3Q68DE3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.63■□□□□ 0.57
USF3Q68DE3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
USF3Q68DE3 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
USF3Q68DE3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.63■□□□□ 0.57
USF3Q68DE3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USF3Q68DE3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 KRT19P1-201ENST00000405746 1186 ntBASIC18.62■□□□□ 0.57
USF3Q68DE3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 AC092068.2-201ENST00000590491 1708 ntBASIC18.62■□□□□ 0.57
USF3Q68DE3 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.62■□□□□ 0.57
USF3Q68DE3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.62■□□□□ 0.57
USF3Q68DE3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.62■□□□□ 0.57
USF3Q68DE3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF3Q68DE3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.62■□□□□ 0.57
USF3Q68DE3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.61■□□□□ 0.57
USF3Q68DE3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
USF3Q68DE3 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.61■□□□□ 0.57
USF3Q68DE3 AC080038.1-201ENST00000611274 1154 ntBASIC18.61■□□□□ 0.57
USF3Q68DE3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
USF3Q68DE3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.61■□□□□ 0.57
USF3Q68DE3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF3Q68DE3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.61■□□□□ 0.57
USF3Q68DE3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.61■□□□□ 0.57
USF3Q68DE3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.61■□□□□ 0.57
USF3Q68DE3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
USF3Q68DE3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF3Q68DE3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.6■□□□□ 0.57
USF3Q68DE3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.6■□□□□ 0.57
USF3Q68DE3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.6■□□□□ 0.57
USF3Q68DE3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.6■□□□□ 0.57
USF3Q68DE3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.6■□□□□ 0.57
USF3Q68DE3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.6■□□□□ 0.57
USF3Q68DE3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF3Q68DE3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.6■□□□□ 0.57
USF3Q68DE3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.6■□□□□ 0.57
USF3Q68DE3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USF3Q68DE3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF3Q68DE3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
USF3Q68DE3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.59■□□□□ 0.57
USF3Q68DE3 AC087239.1-201ENST00000622671 572 ntBASIC18.59■□□□□ 0.57
USF3Q68DE3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
USF3Q68DE3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.59■□□□□ 0.57
USF3Q68DE3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF3Q68DE3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms