Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 IKBKGP1-201ENST00000612193 1073 ntBASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 AC139530.1-201ENST00000575312 1977 ntBASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM3Q53GG5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM3Q53GG5 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM3Q53GG5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC17.83■□□□□ 0.45
PDLIM3Q53GG5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 MIR939-201ENST00000401314 82 ntBASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 AC092053.2-201ENST00000640557 1818 ntBASIC17.83■□□□□ 0.44
PDLIM3Q53GG5 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PDLIM3Q53GG5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PDLIM3Q53GG5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PDLIM3Q53GG5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PDLIM3Q53GG5 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.81■□□□□ 0.44
PDLIM3Q53GG5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms