Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 ATP5G2P3-201ENST00000429083 425 ntBASIC19.29■□□□□ 0.68
CCDC58Q4VC31 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 MIR4508-201ENST00000584178 70 ntBASIC19.29■□□□□ 0.68
CCDC58Q4VC31 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
CCDC58Q4VC31 AC005703.6-201ENST00000623265 1329 ntBASIC19.28■□□□□ 0.68
CCDC58Q4VC31 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC58Q4VC31 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 AC004987.1-201ENST00000428627 508 ntBASIC19.27■□□□□ 0.68
CCDC58Q4VC31 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 MIR6722-201ENST00000617286 78 ntBASIC19.27■□□□□ 0.68
CCDC58Q4VC31 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC58Q4VC31 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CCDC58Q4VC31 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC58Q4VC31 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 AC010980.1-201ENST00000587192 1142 ntBASIC19.26■□□□□ 0.67
CCDC58Q4VC31 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC58Q4VC31 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 AC244015.2-201ENST00000616358 1861 ntBASIC19.25■□□□□ 0.67
CCDC58Q4VC31 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 CA15P2-201ENST00000611168 834 ntBASIC19.25■□□□□ 0.67
CCDC58Q4VC31 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.25■□□□□ 0.67
CCDC58Q4VC31 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC58Q4VC31 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 AC137630.3-201ENST00000607245 391 ntBASIC19.24■□□□□ 0.67
CCDC58Q4VC31 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC58Q4VC31 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC58Q4VC31 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms