Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 BX664725.1-201ENST00000438252 379 ntBASIC19.56■□□□□ 0.72
ZNF404Q494X3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 AC137630.3-201ENST00000607245 391 ntBASIC19.56■□□□□ 0.72
ZNF404Q494X3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 AC087742.1-201ENST00000575880 1738 ntBASIC19.56■□□□□ 0.72
ZNF404Q494X3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF404Q494X3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF404Q494X3 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF404Q494X3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF404Q494X3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
ZNF404Q494X3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 ALDH1A3-203ENST00000557963 1670 ntBASIC19.54■□□□□ 0.72
ZNF404Q494X3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 AC007952.6-201ENST00000573168 2673 ntBASIC19.54■□□□□ 0.72
ZNF404Q494X3 AC003957.1-201ENST00000625108 2673 ntBASIC19.54■□□□□ 0.72
ZNF404Q494X3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF404Q494X3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
ZNF404Q494X3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF404Q494X3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 AC239859.2-201ENST00000444165 318 ntBASIC19.53■□□□□ 0.72
ZNF404Q494X3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF404Q494X3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 AL022069.1-201ENST00000568025 1636 ntBASIC19.53■□□□□ 0.72
ZNF404Q494X3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF404Q494X3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF404Q494X3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF404Q494X3 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF404Q494X3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 AC244015.2-201ENST00000616358 1861 ntBASIC19.52■□□□□ 0.72
ZNF404Q494X3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.52■□□□□ 0.72
ZNF404Q494X3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
ZNF404Q494X3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF404Q494X3 KRT125P-201ENST00000546827 989 ntBASIC19.52■□□□□ 0.72
ZNF404Q494X3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ZNF404Q494X3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
ZNF404Q494X3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF404Q494X3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF404Q494X3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF404Q494X3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.51■□□□□ 0.71
ZNF404Q494X3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.51■□□□□ 0.71
ZNF404Q494X3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.51■□□□□ 0.71
ZNF404Q494X3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
ZNF404Q494X3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF404Q494X3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF404Q494X3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.5■□□□□ 0.71
ZNF404Q494X3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF404Q494X3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.5■□□□□ 0.71
ZNF404Q494X3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms