Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 RPS20-210ENST00000523936 899 ntTSL 2 BASIC13.68□□□□□ -0.22
HSPG2P98160 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HSPG2P98160 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC13.68□□□□□ -0.22
HSPG2P98160 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
HSPG2P98160 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC13.67□□□□□ -0.22
HSPG2P98160 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 AC012306.2-201ENST00000609350 630 ntBASIC13.67□□□□□ -0.22
HSPG2P98160 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 SNORA78-201ENST00000459373 127 ntBASIC13.67□□□□□ -0.22
HSPG2P98160 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC13.67□□□□□ -0.22
HSPG2P98160 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HSPG2P98160 TERF1P5-201ENST00000477545 1207 ntBASIC13.67□□□□□ -0.22
HSPG2P98160 AC091874.3-201ENST00000512672 1195 ntBASIC13.67□□□□□ -0.22
HSPG2P98160 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.67□□□□□ -0.22
HSPG2P98160 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 AC135731.1-201ENST00000569415 2548 ntBASIC13.66□□□□□ -0.22
HSPG2P98160 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC13.66□□□□□ -0.22
HSPG2P98160 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HSPG2P98160 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC13.66□□□□□ -0.22
HSPG2P98160 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
HSPG2P98160 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC13.66□□□□□ -0.22
HSPG2P98160 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
HSPG2P98160 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC13.66□□□□□ -0.22
HSPG2P98160 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC13.66□□□□□ -0.22
HSPG2P98160 CEBPA-AS1-201ENST00000592982 2198 ntBASIC13.66□□□□□ -0.22
HSPG2P98160 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HSPG2P98160 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 AC005224.4-201ENST00000583262 1652 ntBASIC13.65□□□□□ -0.22
HSPG2P98160 DUSP8P5-201ENST00000422884 1815 ntBASIC13.65□□□□□ -0.22
HSPG2P98160 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HSPG2P98160 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.65□□□□□ -0.22
HSPG2P98160 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.65□□□□□ -0.22
HSPG2P98160 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC13.65□□□□□ -0.22
HSPG2P98160 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC13.65□□□□□ -0.22
HSPG2P98160 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC13.65□□□□□ -0.22
HSPG2P98160 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HSPG2P98160 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
HSPG2P98160 AC013268.1-206ENST00000638368 961 ntBASIC13.65□□□□□ -0.22
HSPG2P98160 AC112229.1-201ENST00000639295 961 ntBASIC13.65□□□□□ -0.22
HSPG2P98160 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HSPG2P98160 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC13.64□□□□□ -0.23
HSPG2P98160 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
HSPG2P98160 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.64□□□□□ -0.23
HSPG2P98160 MDFI-202ENST00000373050 809 ntTSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 SERP1-208ENST00000491660 830 ntTSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 UBE2SP1-201ENST00000450587 669 ntBASIC13.64□□□□□ -0.23
HSPG2P98160 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC13.64□□□□□ -0.23
HSPG2P98160 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HSPG2P98160 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.64□□□□□ -0.23
HSPG2P98160 TSPY15P-201ENST00000457163 923 ntBASIC13.64□□□□□ -0.23
HSPG2P98160 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC13.64□□□□□ -0.23
HSPG2P98160 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HSPG2P98160 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC13.63□□□□□ -0.23
HSPG2P98160 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
HSPG2P98160 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 AC142086.6-201ENST00000621154 1765 ntBASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms