Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
RPS28P62857 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
RPS28P62857 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
RPS28P62857 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
RPS28P62857 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC12.73□□□□□ -0.37
RPS28P62857 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
RPS28P62857 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC12.73□□□□□ -0.37
RPS28P62857 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
RPS28P62857 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC12.73□□□□□ -0.37
RPS28P62857 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
RPS28P62857 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC12.72□□□□□ -0.37
RPS28P62857 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC12.72□□□□□ -0.37
RPS28P62857 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC12.72□□□□□ -0.37
RPS28P62857 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPS28P62857 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.72□□□□□ -0.37
RPS28P62857 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
RPS28P62857 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPS28P62857 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
RPS28P62857 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC12.71□□□□□ -0.37
RPS28P62857 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC12.71□□□□□ -0.37
RPS28P62857 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPS28P62857 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC12.71□□□□□ -0.37
RPS28P62857 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
RPS28P62857 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPS28P62857 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPS28P62857 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
RPS28P62857 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC12.71□□□□□ -0.38
RPS28P62857 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.71□□□□□ -0.38
RPS28P62857 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC12.71□□□□□ -0.38
RPS28P62857 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPS28P62857 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC12.7□□□□□ -0.38
RPS28P62857 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC12.7□□□□□ -0.38
RPS28P62857 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC12.7□□□□□ -0.38
RPS28P62857 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 TNRC18P3-201ENST00000441896 2691 ntBASIC12.7□□□□□ -0.38
RPS28P62857 AFG3L1P-217ENST00000557444 2447 ntBASIC12.7□□□□□ -0.38
RPS28P62857 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPS28P62857 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC12.69□□□□□ -0.38
RPS28P62857 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC12.69□□□□□ -0.38
RPS28P62857 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC12.69□□□□□ -0.38
RPS28P62857 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC12.69□□□□□ -0.38
RPS28P62857 PLK5-205ENST00000642079 1969 ntBASIC12.69□□□□□ -0.38
RPS28P62857 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC12.69□□□□□ -0.38
RPS28P62857 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
RPS28P62857 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 AC079598.2-202ENST00000546624 1451 ntBASIC12.69□□□□□ -0.38
RPS28P62857 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC12.69□□□□□ -0.38
RPS28P62857 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC12.69□□□□□ -0.38
RPS28P62857 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
RPS28P62857 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC12.69□□□□□ -0.38
RPS28P62857 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
RPS28P62857 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms