Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SUMO3P55854 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SUMO3P55854 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SUMO3P55854 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SUMO3P55854 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SUMO3P55854 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SUMO3P55854 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.67■□□□□ 0.74
SUMO3P55854 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.67■□□□□ 0.74
SUMO3P55854 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.67■□□□□ 0.74
SUMO3P55854 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.67■□□□□ 0.74
SUMO3P55854 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.67■□□□□ 0.74
SUMO3P55854 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SUMO3P55854 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SUMO3P55854 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.67■□□□□ 0.74
SUMO3P55854 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SUMO3P55854 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SUMO3P55854 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SUMO3P55854 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SUMO3P55854 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SUMO3P55854 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SUMO3P55854 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.66■□□□□ 0.74
SUMO3P55854 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SUMO3P55854 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
SUMO3P55854 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.65■□□□□ 0.74
SUMO3P55854 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.65■□□□□ 0.74
SUMO3P55854 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.65■□□□□ 0.74
SUMO3P55854 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.65■□□□□ 0.74
SUMO3P55854 SMUG1P1-201ENST00000590640 811 ntBASIC19.65■□□□□ 0.74
SUMO3P55854 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.65■□□□□ 0.74
SUMO3P55854 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.65■□□□□ 0.74
SUMO3P55854 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SUMO3P55854 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
SUMO3P55854 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SUMO3P55854 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.64■□□□□ 0.74
SUMO3P55854 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
SUMO3P55854 AC105265.2-201ENST00000467189 838 ntBASIC19.64■□□□□ 0.73
SUMO3P55854 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.64■□□□□ 0.73
SUMO3P55854 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.64■□□□□ 0.73
SUMO3P55854 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.64■□□□□ 0.73
SUMO3P55854 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.64■□□□□ 0.73
SUMO3P55854 AC105233.4-201ENST00000642045 216 ntBASIC19.64■□□□□ 0.73
SUMO3P55854 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.64■□□□□ 0.73
SUMO3P55854 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SUMO3P55854 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SUMO3P55854 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.63■□□□□ 0.73
SUMO3P55854 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SUMO3P55854 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SUMO3P55854 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.63■□□□□ 0.73
SUMO3P55854 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SUMO3P55854 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.62■□□□□ 0.73
SUMO3P55854 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.62■□□□□ 0.73
SUMO3P55854 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.62■□□□□ 0.73
SUMO3P55854 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
SUMO3P55854 AL354811.1-201ENST00000610286 706 ntBASIC19.62■□□□□ 0.73
SUMO3P55854 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SUMO3P55854 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms