Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ABHD17AP5-201ENST00000580133 923 ntBASIC17.7■□□□□ 0.42
NKX2-1P43699 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.7■□□□□ 0.42
NKX2-1P43699 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
NKX2-1P43699 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX2-1P43699 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.69■□□□□ 0.42
NKX2-1P43699 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.69■□□□□ 0.42
NKX2-1P43699 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
NKX2-1P43699 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC17.69■□□□□ 0.42
NKX2-1P43699 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
NKX2-1P43699 MIR4281-201ENST00000580852 62 ntBASIC17.69■□□□□ 0.42
NKX2-1P43699 AC129492.7-201ENST00000622992 756 ntBASIC17.69■□□□□ 0.42
NKX2-1P43699 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NKX2-1P43699 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-1P43699 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-1P43699 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NKX2-1P43699 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX2-1P43699 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX2-1P43699 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-1P43699 AC139795.1-202ENST00000500444 432 ntBASIC17.68■□□□□ 0.42
NKX2-1P43699 U85056.1-201ENST00000616429 682 ntBASIC17.68■□□□□ 0.42
NKX2-1P43699 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
NKX2-1P43699 AC009086.3-201ENST00000623486 1008 ntBASIC17.68■□□□□ 0.42
NKX2-1P43699 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
NKX2-1P43699 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-1P43699 Z98882.1-201ENST00000622160 2253 ntBASIC17.68■□□□□ 0.42
NKX2-1P43699 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-1P43699 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-1P43699 FP325331.1-202ENST00000623531 1380 ntBASIC17.67■□□□□ 0.42
NKX2-1P43699 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-1P43699 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-1P43699 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX2-1P43699 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-1P43699 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-1P43699 THA1P-201ENST00000590384 1145 ntBASIC17.67■□□□□ 0.42
NKX2-1P43699 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-1P43699 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX2-1P43699 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
NKX2-1P43699 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX2-1P43699 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-1P43699 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX2-1P43699 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-1P43699 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX2-1P43699 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-1P43699 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-1P43699 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-1P43699 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-1P43699 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
NKX2-1P43699 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 KRT18P24-201ENST00000344739 1156 ntBASIC17.65■□□□□ 0.42
NKX2-1P43699 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NKX2-1P43699 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX2-1P43699 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NKX2-1P43699 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-1P43699 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
NKX2-1P43699 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NKX2-1P43699 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-1P43699 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-1P43699 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-1P43699 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms