Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.62■■□□□ 1.21
PTPN9P43378 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.62■■□□□ 1.21
PTPN9P43378 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.62■■□□□ 1.21
PTPN9P43378 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
PTPN9P43378 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTPN9P43378 OR7E47P-201ENST00000546390 1422 ntBASIC22.62■■□□□ 1.21
PTPN9P43378 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
PTPN9P43378 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
PTPN9P43378 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PTPN9P43378 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PTPN9P43378 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.61■■□□□ 1.21
PTPN9P43378 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.61■■□□□ 1.21
PTPN9P43378 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.61■■□□□ 1.21
PTPN9P43378 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTPN9P43378 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PTPN9P43378 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
PTPN9P43378 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
PTPN9P43378 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
PTPN9P43378 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTPN9P43378 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.59■■□□□ 1.21
PTPN9P43378 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
PTPN9P43378 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
PTPN9P43378 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.59■■□□□ 1.21
PTPN9P43378 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.59■■□□□ 1.21
PTPN9P43378 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTPN9P43378 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
PTPN9P43378 AC005837.3-201ENST00000612163 286 ntBASIC22.58■■□□□ 1.21
PTPN9P43378 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.58■■□□□ 1.21
PTPN9P43378 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
PTPN9P43378 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.58■■□□□ 1.2
PTPN9P43378 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PTPN9P43378 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
PTPN9P43378 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
PTPN9P43378 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTPN9P43378 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PTPN9P43378 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PTPN9P43378 MIR638-201ENST00000385237 100 ntBASIC22.57■■□□□ 1.2
PTPN9P43378 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.57■■□□□ 1.2
PTPN9P43378 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
PTPN9P43378 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.57■■□□□ 1.2
PTPN9P43378 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.57■■□□□ 1.2
PTPN9P43378 C11orf96-202ENST00000528572 1834 ntBASIC22.57■■□□□ 1.2
PTPN9P43378 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PTPN9P43378 TSPY26P-201ENST00000476365 1326 ntBASIC22.57■■□□□ 1.2
PTPN9P43378 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.56■■□□□ 1.2
PTPN9P43378 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.56■■□□□ 1.2
PTPN9P43378 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.56■■□□□ 1.2
PTPN9P43378 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC22.56■■□□□ 1.2
PTPN9P43378 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTPN9P43378 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
PTPN9P43378 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.56■■□□□ 1.2
PTPN9P43378 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.55■■□□□ 1.2
PTPN9P43378 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.55■■□□□ 1.2
PTPN9P43378 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.55■■□□□ 1.2
PTPN9P43378 AC142381.2-201ENST00000566120 298 ntBASIC22.55■■□□□ 1.2
PTPN9P43378 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
PTPN9P43378 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PTPN9P43378 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.55■■□□□ 1.2
PTPN9P43378 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTPN9P43378 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.54■■□□□ 1.2
PTPN9P43378 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
PTPN9P43378 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PTPN9P43378 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
PTPN9P43378 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.54■■□□□ 1.2
PTPN9P43378 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTPN9P43378 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTPN9P43378 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PTPN9P43378 SMUG1P1-201ENST00000590640 811 ntBASIC22.54■■□□□ 1.2
PTPN9P43378 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms