Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21■□□□□ 0.95
HNF4AP41235 AC136469.2-201ENST00000623944 1028 ntBASIC21■□□□□ 0.95
HNF4AP41235 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
HNF4AP41235 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21■□□□□ 0.95
HNF4AP41235 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21■□□□□ 0.95
HNF4AP41235 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.99■□□□□ 0.95
HNF4AP41235 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HNF4AP41235 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.99■□□□□ 0.95
HNF4AP41235 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HNF4AP41235 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HNF4AP41235 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
HNF4AP41235 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.98■□□□□ 0.95
HNF4AP41235 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.98■□□□□ 0.95
HNF4AP41235 AC010525.1-201ENST00000585559 441 ntBASIC20.98■□□□□ 0.95
HNF4AP41235 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.98■□□□□ 0.95
HNF4AP41235 C11orf96-202ENST00000528572 1834 ntBASIC20.98■□□□□ 0.95
HNF4AP41235 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HNF4AP41235 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.98■□□□□ 0.95
HNF4AP41235 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.98■□□□□ 0.95
HNF4AP41235 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.98■□□□□ 0.95
HNF4AP41235 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.97■□□□□ 0.95
HNF4AP41235 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
HNF4AP41235 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
HNF4AP41235 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.97■□□□□ 0.95
HNF4AP41235 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
HNF4AP41235 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.97■□□□□ 0.95
HNF4AP41235 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HNF4AP41235 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HNF4AP41235 AL139246.5-201ENST00000606645 996 ntBASIC20.96■□□□□ 0.95
HNF4AP41235 AC106739.1-201ENST00000617035 715 ntBASIC20.96■□□□□ 0.95
HNF4AP41235 AC087239.1-201ENST00000622671 572 ntBASIC20.96■□□□□ 0.95
HNF4AP41235 LINC00565-201ENST00000562710 2331 ntBASIC20.96■□□□□ 0.95
HNF4AP41235 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.96■□□□□ 0.95
HNF4AP41235 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HNF4AP41235 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HNF4AP41235 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HNF4AP41235 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HNF4AP41235 AC079089.2-201ENST00000531211 1277 ntBASIC20.95■□□□□ 0.94
HNF4AP41235 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.95■□□□□ 0.94
HNF4AP41235 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.95■□□□□ 0.94
HNF4AP41235 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HNF4AP41235 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HNF4AP41235 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HNF4AP41235 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
HNF4AP41235 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.95■□□□□ 0.94
HNF4AP41235 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.94■□□□□ 0.94
HNF4AP41235 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 SLC47A1P1-202ENST00000449666 945 ntBASIC20.94■□□□□ 0.94
HNF4AP41235 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.94■□□□□ 0.94
HNF4AP41235 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.94■□□□□ 0.94
HNF4AP41235 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.94■□□□□ 0.94
HNF4AP41235 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HNF4AP41235 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HNF4AP41235 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
HNF4AP41235 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms