Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.72■■□□□ 1.07
VIMP08670 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 FEM1AP4-201ENST00000443167 1987 ntBASIC21.72■■□□□ 1.07
VIMP08670 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 LINC01960-201ENST00000563759 1884 ntBASIC21.71■■□□□ 1.07
VIMP08670 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VIMP08670 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.71■■□□□ 1.07
VIMP08670 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VIMP08670 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VIMP08670 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VIMP08670 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.71■■□□□ 1.07
VIMP08670 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VIMP08670 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VIMP08670 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
VIMP08670 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.71■■□□□ 1.07
VIMP08670 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VIMP08670 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
VIMP08670 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VIMP08670 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VIMP08670 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VIMP08670 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VIMP08670 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VIMP08670 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
VIMP08670 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.69■■□□□ 1.06
VIMP08670 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
VIMP08670 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.69■■□□□ 1.06
VIMP08670 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.69■■□□□ 1.06
VIMP08670 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.68■■□□□ 1.06
VIMP08670 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.68■■□□□ 1.06
VIMP08670 SPCS2P3-201ENST00000500401 656 ntBASIC21.68■■□□□ 1.06
VIMP08670 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.68■■□□□ 1.06
VIMP08670 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
VIMP08670 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VIMP08670 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.67■■□□□ 1.06
VIMP08670 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VIMP08670 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VIMP08670 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VIMP08670 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VIMP08670 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VIMP08670 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
VIMP08670 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.67■■□□□ 1.06
VIMP08670 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
VIMP08670 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
VIMP08670 LONRF2P2-201ENST00000439212 571 ntBASIC21.66■■□□□ 1.06
VIMP08670 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VIMP08670 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.66■■□□□ 1.06
VIMP08670 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.66■■□□□ 1.06
VIMP08670 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.66■■□□□ 1.06
VIMP08670 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
VIMP08670 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
VIMP08670 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.65■■□□□ 1.06
VIMP08670 MIR4449-201ENST00000578365 66 ntBASIC21.65■■□□□ 1.06
VIMP08670 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.65■■□□□ 1.06
VIMP08670 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
VIMP08670 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
VIMP08670 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VIMP08670 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VIMP08670 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.64■■□□□ 1.06
VIMP08670 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.64■■□□□ 1.06
VIMP08670 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
VIMP08670 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VIMP08670 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
VIMP08670 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.64■■□□□ 1.05
VIMP08670 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms