Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.34■■□□□ 1.49
PGK1P00558 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.34■■□□□ 1.49
PGK1P00558 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.34■■□□□ 1.49
PGK1P00558 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC24.34■■□□□ 1.49
PGK1P00558 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
PGK1P00558 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PGK1P00558 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PGK1P00558 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.33■■□□□ 1.49
PGK1P00558 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.33■■□□□ 1.49
PGK1P00558 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.33■■□□□ 1.49
PGK1P00558 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PGK1P00558 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
PGK1P00558 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
PGK1P00558 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.32■■□□□ 1.48
PGK1P00558 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.32■■□□□ 1.48
PGK1P00558 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
PGK1P00558 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.32■■□□□ 1.48
PGK1P00558 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
PGK1P00558 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.32■■□□□ 1.48
PGK1P00558 AP001160.3-201ENST00000601484 763 ntBASIC24.32■■□□□ 1.48
PGK1P00558 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PGK1P00558 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
PGK1P00558 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24.31■■□□□ 1.48
PGK1P00558 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PGK1P00558 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
PGK1P00558 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PGK1P00558 MIR4651-201ENST00000582622 73 ntBASIC24.31■■□□□ 1.48
PGK1P00558 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.31■■□□□ 1.48
PGK1P00558 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.31■■□□□ 1.48
PGK1P00558 MYCNOS-205ENST00000641950 531 ntBASIC24.31■■□□□ 1.48
PGK1P00558 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PGK1P00558 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
PGK1P00558 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.3■■□□□ 1.48
PGK1P00558 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.3■■□□□ 1.48
PGK1P00558 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
PGK1P00558 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PGK1P00558 AL139125.2-201ENST00000623134 1869 ntBASIC24.3■■□□□ 1.48
PGK1P00558 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PGK1P00558 SLC29A4P1-201ENST00000398760 971 ntBASIC24.29■■□□□ 1.48
PGK1P00558 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
PGK1P00558 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
PGK1P00558 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
PGK1P00558 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.29■■□□□ 1.48
PGK1P00558 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.29■■□□□ 1.48
PGK1P00558 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.29■■□□□ 1.48
PGK1P00558 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PGK1P00558 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.29■■□□□ 1.48
PGK1P00558 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
PGK1P00558 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
PGK1P00558 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
PGK1P00558 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
PGK1P00558 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.28■■□□□ 1.48
PGK1P00558 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
PGK1P00558 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PGK1P00558 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PGK1P00558 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PGK1P00558 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.26■■□□□ 1.47
PGK1P00558 DUSP8P5-201ENST00000422884 1815 ntBASIC24.26■■□□□ 1.47
PGK1P00558 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.26■■□□□ 1.47
PGK1P00558 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PGK1P00558 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
PGK1P00558 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.25■■□□□ 1.47
PGK1P00558 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
PGK1P00558 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms