Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC079089.2-201ENST00000531211 1277 ntBASIC20.74■□□□□ 0.91
SEMA3DO95025 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.74■□□□□ 0.91
SEMA3DO95025 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.74■□□□□ 0.91
SEMA3DO95025 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SEMA3DO95025 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SEMA3DO95025 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
SEMA3DO95025 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.73■□□□□ 0.91
SEMA3DO95025 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.73■□□□□ 0.91
SEMA3DO95025 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.73■□□□□ 0.91
SEMA3DO95025 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
SEMA3DO95025 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.73■□□□□ 0.91
SEMA3DO95025 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SEMA3DO95025 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SEMA3DO95025 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SEMA3DO95025 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SEMA3DO95025 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SEMA3DO95025 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SEMA3DO95025 UNC93B3-201ENST00000308076 687 ntBASIC20.72■□□□□ 0.91
SEMA3DO95025 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SEMA3DO95025 SLC47A1P1-202ENST00000449666 945 ntBASIC20.72■□□□□ 0.91
SEMA3DO95025 AC010141.3-201ENST00000456659 717 ntBASIC20.72■□□□□ 0.91
SEMA3DO95025 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.72■□□□□ 0.91
SEMA3DO95025 AP005435.1-201ENST00000529293 1178 ntBASIC20.72■□□□□ 0.91
SEMA3DO95025 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SEMA3DO95025 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SEMA3DO95025 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SEMA3DO95025 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.72■□□□□ 0.91
SEMA3DO95025 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SEMA3DO95025 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SEMA3DO95025 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 C11orf96-202ENST00000528572 1834 ntBASIC20.71■□□□□ 0.91
SEMA3DO95025 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.71■□□□□ 0.91
SEMA3DO95025 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SEMA3DO95025 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SEMA3DO95025 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.71■□□□□ 0.91
SEMA3DO95025 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SEMA3DO95025 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEMA3DO95025 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEMA3DO95025 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SEMA3DO95025 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEMA3DO95025 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.7■□□□□ 0.9
SEMA3DO95025 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SEMA3DO95025 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SEMA3DO95025 MIR4767-201ENST00000582827 78 ntBASIC20.7■□□□□ 0.9
SEMA3DO95025 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 AL136162.1-201ENST00000607711 1078 ntBASIC20.69■□□□□ 0.9
SEMA3DO95025 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SEMA3DO95025 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.69■□□□□ 0.9
SEMA3DO95025 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SEMA3DO95025 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEMA3DO95025 BX842568.3-201ENST00000418104 571 ntBASIC20.68■□□□□ 0.9
SEMA3DO95025 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.68■□□□□ 0.9
SEMA3DO95025 AC024257.2-201ENST00000549699 147 ntBASIC20.68■□□□□ 0.9
SEMA3DO95025 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.68■□□□□ 0.9
SEMA3DO95025 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.68■□□□□ 0.9
SEMA3DO95025 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SEMA3DO95025 AC135279.3-201ENST00000610945 1311 ntBASIC20.68■□□□□ 0.9
SEMA3DO95025 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms