Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SDC3O75056 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SDC3O75056 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
SDC3O75056 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SDC3O75056 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SDC3O75056 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.27■□□□□ 0.99
SDC3O75056 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SDC3O75056 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SDC3O75056 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SDC3O75056 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SDC3O75056 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SDC3O75056 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.26■□□□□ 0.99
SDC3O75056 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SDC3O75056 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
SDC3O75056 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.26■□□□□ 0.99
SDC3O75056 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SDC3O75056 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.26■□□□□ 0.99
SDC3O75056 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.26■□□□□ 0.99
SDC3O75056 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.26■□□□□ 0.99
SDC3O75056 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.26■□□□□ 0.99
SDC3O75056 ANOS2P-203ENST00000472227 1816 ntBASIC21.26■□□□□ 0.99
SDC3O75056 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.25■□□□□ 0.99
SDC3O75056 AC005224.4-201ENST00000583262 1652 ntBASIC21.25■□□□□ 0.99
SDC3O75056 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SDC3O75056 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.25■□□□□ 0.99
SDC3O75056 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SDC3O75056 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.25■□□□□ 0.99
SDC3O75056 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 AC104771.1-201ENST00000603335 964 ntBASIC21.25■□□□□ 0.99
SDC3O75056 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
SDC3O75056 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SDC3O75056 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.24■□□□□ 0.99
SDC3O75056 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.24■□□□□ 0.99
SDC3O75056 MIR663A-201ENST00000385250 93 ntBASIC21.24■□□□□ 0.99
SDC3O75056 AL355802.2-201ENST00000402069 882 ntBASIC21.24■□□□□ 0.99
SDC3O75056 AC104187.1-201ENST00000607510 612 ntBASIC21.24■□□□□ 0.99
SDC3O75056 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.24■□□□□ 0.99
SDC3O75056 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SDC3O75056 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SDC3O75056 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SDC3O75056 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SDC3O75056 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SDC3O75056 KRT18P11-201ENST00000435214 1283 ntBASIC21.23■□□□□ 0.99
SDC3O75056 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SDC3O75056 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SDC3O75056 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SDC3O75056 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.23■□□□□ 0.99
SDC3O75056 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SDC3O75056 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SDC3O75056 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SDC3O75056 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.22■□□□□ 0.99
SDC3O75056 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.22■□□□□ 0.99
SDC3O75056 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.22■□□□□ 0.99
SDC3O75056 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SDC3O75056 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.22■□□□□ 0.99
SDC3O75056 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.22■□□□□ 0.99
SDC3O75056 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.22■□□□□ 0.99
SDC3O75056 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.22■□□□□ 0.99
SDC3O75056 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.22■□□□□ 0.99
SDC3O75056 AL109923.1-201ENST00000618799 583 ntBASIC21.22■□□□□ 0.99
SDC3O75056 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
SDC3O75056 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.22■□□□□ 0.99
SDC3O75056 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SDC3O75056 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.22■□□□□ 0.99
SDC3O75056 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.21■□□□□ 0.99
SDC3O75056 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.21■□□□□ 0.99
SDC3O75056 KRT87P-202ENST00000534226 1464 ntBASIC21.21■□□□□ 0.99
SDC3O75056 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.21■□□□□ 0.99
SDC3O75056 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SDC3O75056 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SDC3O75056 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.21■□□□□ 0.99
SDC3O75056 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDC3O75056 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
SDC3O75056 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDC3O75056 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDC3O75056 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDC3O75056 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
SDC3O75056 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.2■□□□□ 0.98
SDC3O75056 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms