Protein–RNA interactions for Protein: O60749

SNX2, Sorting nexin-2, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX2O60749 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX2O60749 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SNX2O60749 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.67■■□□□ 1.06
SNX2O60749 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX2O60749 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX2O60749 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SNX2O60749 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SNX2O60749 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.66■■□□□ 1.06
SNX2O60749 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SNX2O60749 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.66■■□□□ 1.06
SNX2O60749 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SNX2O60749 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SNX2O60749 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SNX2O60749 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 ECEL1P1-201ENST00000373592 1742 ntBASIC21.66■■□□□ 1.06
SNX2O60749 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SNX2O60749 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
SNX2O60749 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.65■■□□□ 1.06
SNX2O60749 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SNX2O60749 AC242852.2-201ENST00000615738 1807 ntBASIC21.65■■□□□ 1.06
SNX2O60749 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.65■■□□□ 1.06
SNX2O60749 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SNX2O60749 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.65■■□□□ 1.06
SNX2O60749 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.65■■□□□ 1.06
SNX2O60749 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SNX2O60749 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX2O60749 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX2O60749 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SNX2O60749 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SNX2O60749 LINC00526-201ENST00000581067 1875 ntBASIC21.64■■□□□ 1.06
SNX2O60749 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.64■■□□□ 1.06
SNX2O60749 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.64■■□□□ 1.06
SNX2O60749 AC127496.7-201ENST00000625110 1798 ntBASIC21.64■■□□□ 1.06
SNX2O60749 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SNX2O60749 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.64■■□□□ 1.06
SNX2O60749 TSPY26P-201ENST00000476365 1326 ntBASIC21.64■■□□□ 1.05
SNX2O60749 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SNX2O60749 OR2I1P-207ENST00000453522 948 ntBASIC21.64■■□□□ 1.05
SNX2O60749 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SNX2O60749 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SNX2O60749 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SNX2O60749 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 IRS3P-201ENST00000223076 1006 ntBASIC21.63■■□□□ 1.05
SNX2O60749 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.63■■□□□ 1.05
SNX2O60749 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.63■■□□□ 1.05
SNX2O60749 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
SNX2O60749 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SNX2O60749 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.62■■□□□ 1.05
SNX2O60749 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SNX2O60749 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
SNX2O60749 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SNX2O60749 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SNX2O60749 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
SNX2O60749 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SNX2O60749 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SNX2O60749 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SNX2O60749 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SNX2O60749 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.61■■□□□ 1.05
SNX2O60749 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.61■■□□□ 1.05
SNX2O60749 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SNX2O60749 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SNX2O60749 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SNX2O60749 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SNX2O60749 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SNX2O60749 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX2O60749 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX2O60749 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
SNX2O60749 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SNX2O60749 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.6■■□□□ 1.05
SNX2O60749 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.6■■□□□ 1.05
SNX2O60749 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SNX2O60749 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms