Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PIGN-202ENST00000400334 4456 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.574e-6■■■■■ 44.8
SF3B1O75533 PIGN-223ENST00000638369 4205 ntTSL 5 BASIC11.43□□□□□ -0.584e-6■■■■■ 44.8
SF3B1O75533 PIGN-201ENST00000357637 4723 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.914e-6■■■■■ 44.8
SF3B1O75533 PIGN-251ENST00000640876 6045 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.944e-6■■■■■ 44.8
SF3B1O75533 PIGN-235ENST00000639491 2971 ntTSL 59.04□□□□□ -0.964e-6■■■■■ 44.8
SF3B1O75533 PIGN-237ENST00000639681 4349 ntTSL 58.97□□□□□ -0.974e-6■■■■■ 44.8
SF3B1O75533 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC8.92□□□□□ -0.984e-6■■■■■ 44.8
SF3B1O75533 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC8.16□□□□□ -1.14e-6■■■■■ 44.8
SF3B1O75533 PIGN-248ENST00000640593 3184 ntTSL 57.99□□□□□ -1.134e-6■■■■■ 44.8
SF3B1O75533 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.72□□□□□ -1.174e-6■■■■■ 44.8
SF3B1O75533 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.69□□□□□ -1.184e-6■■■■■ 44.8
SF3B1O75533 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.58□□□□□ -1.364e-6■■■■■ 44.8
SF3B1O75533 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.34□□□□□ -1.44e-6■■■■■ 44.8
SF3B1O75533 PIGN-236ENST00000639600 2493 ntTSL 56.07□□□□□ -1.444e-6■■■■■ 44.8
SF3B1O75533 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.96□□□□□ -1.454e-6■■■■■ 44.8
SF3B1O75533 PIGN-234ENST00000639372 5431 ntTSL 55.69□□□□□ -1.54e-6■■■■■ 44.8
SF3B1O75533 PIGN-243ENST00000640170 4505 ntTSL 55.59□□□□□ -1.514e-6■■■■■ 44.8
SF3B1O75533 PIGN-227ENST00000638858 4112 ntTSL 55.43□□□□□ -1.544e-6■■■■■ 44.8
SF3B1O75533 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.594e-6■■■■■ 44.8
SF3B1O75533 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.614e-6■■■■■ 44.8
SF3B1O75533 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.74e-6■■■■■ 44.8
SF3B1O75533 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.29□□□□□ -1.724e-6■■■■■ 44.8
SF3B1O75533 ARL8B-204ENST00000444332 732 ntTSL 220.65■□□□□ 0.94e-6■■■■■ 44.7
SF3B1O75533 ARL8B-203ENST00000429403 709 ntTSL 520.47■□□□□ 0.874e-6■■■■■ 44.7
SF3B1O75533 ARL8B-205ENST00000455168 1641 ntTSL 217.71■□□□□ 0.434e-6■■■■■ 44.7
SF3B1O75533 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.224e-6■■■■■ 44.7
SF3B1O75533 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.174e-6■■■■■ 44.7
SF3B1O75533 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC13.8□□□□□ -0.24e-6■■■■■ 44.7
SF3B1O75533 ZNF692-205ENST00000462037 827 ntTSL 213.72□□□□□ -0.212e-6■■■■■ 44.7
SF3B1O75533 SREBF2-203ENST00000435061 770 ntTSL 319.02■□□□□ 0.643e-6■■■■■ 44.7
SF3B1O75533 TIAL1-207ENST00000463089 907 ntTSL 58.1□□□□□ -1.111e-8■■■■■ 44.6
SF3B1O75533 TMC6-206ENST00000586271 970 ntTSL 220.28■□□□□ 0.843e-6■■■■■ 44.6
SF3B1O75533 GPI-216ENST00000592144 678 ntTSL 319.87■□□□□ 0.775e-6■■■■■ 44.6
SF3B1O75533 GPI-211ENST00000589640 571 ntTSL 418.82■□□□□ 0.65e-6■■■■■ 44.6
SF3B1O75533 GPI-214ENST00000590375 529 ntTSL 418.82■□□□□ 0.65e-6■■■■■ 44.6
SF3B1O75533 GPI-209ENST00000589399 565 ntTSL 518.75■□□□□ 0.595e-6■■■■■ 44.6
SF3B1O75533 GPI-215ENST00000591204 559 ntTSL 49.54□□□□□ -0.885e-6■■■■■ 44.6
SF3B1O75533 CTCF-203ENST00000566078 1627 ntTSL 232.39■■■□□ 2.783e-6■■■■■ 44.6
SF3B1O75533 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.323e-6■■■■■ 44.6
SF3B1O75533 RCC1-212ENST00000486790 481 ntTSL 529.34■■■□□ 2.293e-6■■■■■ 44.6
SF3B1O75533 TBL2-221ENST00000496056 579 ntTSL 228.39■■■□□ 2.133e-6■■■■■ 44.6
SF3B1O75533 JDP2-205ENST00000558068 454 ntTSL 328.29■■■□□ 2.123e-6■■■■■ 44.6
SF3B1O75533 JDP2-206ENST00000559060 631 ntTSL 328.29■■■□□ 2.123e-6■■■■■ 44.6
SF3B1O75533 NDRG2-276ENST00000557676 633 ntTSL 228.12■■■□□ 2.093e-6■■■■■ 44.6
SF3B1O75533 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.33■■□□□ 1.973e-6■■■■■ 44.6
SF3B1O75533 TBL2-212ENST00000458466 673 ntTSL 327.18■■□□□ 1.943e-6■■■■■ 44.6
SF3B1O75533 NDRG2-247ENST00000555733 924 ntTSL 525.59■■□□□ 1.693e-6■■■■■ 44.6
SF3B1O75533 NDRG2-254ENST00000556420 671 ntTSL 424.93■■□□□ 1.583e-6■■■■■ 44.6
SF3B1O75533 CCDC9-204ENST00000599398 834 ntTSL 324.73■■□□□ 1.553e-6■■■■■ 44.6
SF3B1O75533 ARHGEF1-223ENST00000617585 737 ntTSL 224.55■■□□□ 1.522e-11■■■■■ 44.6
SF3B1O75533 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.513e-6■■■■■ 44.6
SF3B1O75533 NDRG2-241ENST00000555142 609 ntTSL 524.29■■□□□ 1.483e-6■■■■■ 44.6
SF3B1O75533 AMZ2-209ENST00000580548 829 ntTSL 524.12■■□□□ 1.453e-6■■■■■ 44.6
SF3B1O75533 MFSD3-203ENST00000528047 1433 ntTSL 323.98■■□□□ 1.433e-6■■■■■ 44.6
SF3B1O75533 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.8■■□□□ 1.43e-6■■■■■ 44.6
SF3B1O75533 RNF170-201ENST00000240159 2023 ntTSL 223.61■■□□□ 1.373e-6■■■■■ 44.6
SF3B1O75533 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.353e-6■■■■■ 44.6
SF3B1O75533 CSNK1D-216ENST00000581108 607 ntTSL 223.38■■□□□ 1.333e-6■■■■■ 44.6
SF3B1O75533 WIPI2-212ENST00000485854 773 ntTSL 323.26■■□□□ 1.313e-6■■■■■ 44.6
SF3B1O75533 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.313e-6■■■■■ 44.6
SF3B1O75533 PTMS-205ENST00000540828 644 ntTSL 1 (best)23.12■■□□□ 1.293e-6■■■■■ 44.6
SF3B1O75533 PDS5B-207ENST00000482955 581 ntTSL 323.1■■□□□ 1.293e-6■■■■■ 44.6
SF3B1O75533 POR-206ENST00000421059 631 ntTSL 423.01■■□□□ 1.273e-6■■■■■ 44.6
SF3B1O75533 ARL13B-208ENST00000486562 681 ntTSL 322.79■■□□□ 1.243e-6■■■■■ 44.6
SF3B1O75533 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.233e-6■■■■■ 44.6
SF3B1O75533 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.223e-6■■■■■ 44.6
SF3B1O75533 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.183e-6■■■■■ 44.6
SF3B1O75533 MIR4651-201ENST00000582622 73 ntBASIC22.39■■□□□ 1.183e-6■■■■■ 44.6
SF3B1O75533 TRIM37-207ENST00000580973 573 ntTSL 422.31■■□□□ 1.163e-6■■■■■ 44.6
SF3B1O75533 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.163e-6■■■■■ 44.6
SF3B1O75533 PHF1-208ENST00000486845 1099 ntTSL 522.25■■□□□ 1.152e-11■■■■■ 44.6
SF3B1O75533 AMZ2-207ENST00000578175 2276 ntTSL 522.24■■□□□ 1.153e-6■■■■■ 44.6
SF3B1O75533 PKD1-218ENST00000485120 696 ntTSL 321.98■■□□□ 1.113e-6■■■■■ 44.6
SF3B1O75533 LTBP4-206ENST00000546155 1285 ntTSL 221.96■■□□□ 1.113e-6■■■■■ 44.6
SF3B1O75533 CHD4-213ENST00000545584 553 ntTSL 421.87■■□□□ 1.092e-11■■■■■ 44.6
SF3B1O75533 TXNDC17-207ENST00000574734 616 ntTSL 321.77■■□□□ 1.073e-6■■■■■ 44.6
SF3B1O75533 NIPSNAP2-203ENST00000437587 818 ntTSL 521.75■■□□□ 1.073e-6■■■■■ 44.6
SF3B1O75533 DDA1-202ENST00000593466 757 ntTSL 321.72■■□□□ 1.073e-6■■■■■ 44.6
SF3B1O75533 PTMS-203ENST00000538057 976 ntTSL 221.7■■□□□ 1.063e-6■■■■■ 44.6
SF3B1O75533 FCHO1-232ENST00000600209 881 ntTSL 521.56■■□□□ 1.043e-6■■■■■ 44.6
SF3B1O75533 TYMSOS-202ENST00000585033 560 ntTSL 221.46■■□□□ 1.033e-6■■■■■ 44.6
SF3B1O75533 AMZ2-211ENST00000580837 713 ntTSL 521.26■□□□□ 0.993e-6■■■■■ 44.6
SF3B1O75533 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.983e-6■■■■■ 44.6
SF3B1O75533 PHF1-209ENST00000487667 1930 ntTSL 521.19■□□□□ 0.982e-11■■■■■ 44.6
SF3B1O75533 DDA1-204ENST00000596582 502 ntTSL 321.06■□□□□ 0.963e-6■■■■■ 44.6
SF3B1O75533 NDRG2-243ENST00000555384 775 ntTSL 520.96■□□□□ 0.953e-6■■■■■ 44.6
SF3B1O75533 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.953e-6■■■■■ 44.6
SF3B1O75533 FCHO1-212ENST00000596309 598 ntTSL 420.93■□□□□ 0.943e-6■■■■■ 44.6
SF3B1O75533 RNF170-207ENST00000528318 1169 ntTSL 220.9■□□□□ 0.943e-6■■■■■ 44.6
SF3B1O75533 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.73■□□□□ 0.913e-6■■■■■ 44.6
SF3B1O75533 PKD1-223ENST00000561668 665 ntTSL 320.42■□□□□ 0.863e-6■■■■■ 44.6
SF3B1O75533 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.853e-6■■■■■ 44.6
SF3B1O75533 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.35■□□□□ 0.853e-6■■■■■ 44.6
SF3B1O75533 CUL9-216ENST00000513904 938 ntTSL 420.21■□□□□ 0.833e-6■■■■■ 44.6
SF3B1O75533 CUL9-209ENST00000505172 571 ntTSL 420.09■□□□□ 0.813e-6■■■■■ 44.6
SF3B1O75533 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)20.01■□□□□ 0.792e-11■■■■■ 44.6
SF3B1O75533 PKD1-227ENST00000564313 568 ntTSL 419.86■□□□□ 0.773e-6■■■■■ 44.6
SF3B1O75533 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.753e-6■■■■■ 44.6
SF3B1O75533 NDRG2-217ENST00000553567 555 ntTSL 419.73■□□□□ 0.753e-6■■■■■ 44.6
SF3B1O75533 SCRIB-204ENST00000525051 1685 ntTSL 1 (best)19.56■□□□□ 0.723e-6■■■■■ 44.6
Retrieved 100 of 46,956 protein–RNA pairs in 574.7 ms