Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.32■□□□□ 0.2
HLA-DRB4X5D2U9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
HLA-DRB4X5D2U9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 AC008406.3-201ENST00000620001 1374 ntBASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 SF1-220ENST00000626028 704 ntTSL 2 BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 ECEL1P1-201ENST00000373592 1742 ntBASIC16.31■□□□□ 0.2
HLA-DRB4X5D2U9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 LINC01960-201ENST00000563759 1884 ntBASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HLA-DRB4X5D2U9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 SERBP1P1-201ENST00000396021 1160 ntBASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 AC011298.3-201ENST00000615796 283 ntBASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HLA-DRB4X5D2U9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 HES6-206ENST00000409574 738 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.28■□□□□ 0.2
HLA-DRB4X5D2U9 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 OR2I1P-207ENST00000453522 948 ntBASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 AC136469.2-201ENST00000623944 1028 ntBASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HLA-DRB4X5D2U9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.27■□□□□ 0.19
HLA-DRB4X5D2U9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HLA-DRB4X5D2U9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms