Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 AL020996.1-203ENST00000536896 2307 ntBASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3-BMI1R4GMX3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC079630.1-202ENST00000618127 1840 ntBASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC010542.4-201ENST00000563151 1910 ntBASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3-BMI1R4GMX3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC139795.1-202ENST00000500444 432 ntBASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 DUX4L18-201ENST00000553347 1267 ntBASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC019171.1-201ENST00000601251 1056 ntBASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3-BMI1R4GMX3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3-BMI1R4GMX3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 AL022069.1-201ENST00000568025 1636 ntBASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3-BMI1R4GMX3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 AC022616.5-201ENST00000518796 181 ntBASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.27■□□□□ 0.84
COMMD3-BMI1R4GMX3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms