Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC073111.5-205ENST00000641717 521 ntBASIC25.9■■□□□ 1.74
DDX4Q9NQI0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
DDX4Q9NQI0 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.9■■□□□ 1.74
DDX4Q9NQI0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
DDX4Q9NQI0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.73
DDX4Q9NQI0 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
DDX4Q9NQI0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 AC005224.4-201ENST00000583262 1652 ntBASIC25.88■■□□□ 1.73
DDX4Q9NQI0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 AC079140.4-201ENST00000507448 529 ntBASIC25.88■■□□□ 1.73
DDX4Q9NQI0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.88■■□□□ 1.73
DDX4Q9NQI0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
DDX4Q9NQI0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.86■■□□□ 1.73
DDX4Q9NQI0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 KRT19P1-201ENST00000405746 1186 ntBASIC25.85■■□□□ 1.73
DDX4Q9NQI0 TESC-206ENST00000541210 936 ntTSL 3 BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 LINC01960-201ENST00000563759 1884 ntBASIC25.85■■□□□ 1.73
DDX4Q9NQI0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
DDX4Q9NQI0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 HLA-L-209ENST00000420110 1011 ntBASIC25.84■■□□□ 1.73
DDX4Q9NQI0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
DDX4Q9NQI0 ESRRAP2-201ENST00000418437 1549 ntBASIC25.83■■□□□ 1.73
DDX4Q9NQI0 GAS2L1P2-201ENST00000436355 1356 ntBASIC25.83■■□□□ 1.73
DDX4Q9NQI0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
DDX4Q9NQI0 DUSP8P5-201ENST00000422884 1815 ntBASIC25.82■■□□□ 1.72
DDX4Q9NQI0 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
DDX4Q9NQI0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 BID-214ENST00000617586 542 ntTSL 5 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC25.81■■□□□ 1.72
DDX4Q9NQI0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms