Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
CDT1Q9H211 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CDT1Q9H211 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.66■■□□□ 1.38
CDT1Q9H211 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L2-201ENST00000561772 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.65■■□□□ 1.38
CDT1Q9H211 CCDC92B-201ENST00000575506 885 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L6-201ENST00000626483 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L1-201ENST00000627662 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L8-201ENST00000629013 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L3-201ENST00000630187 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L7-201ENST00000630678 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 DUX4L5-201ENST00000630834 1275 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
CDT1Q9H211 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CDT1Q9H211 LINC02228-203ENST00000641970 1355 ntBASIC23.65■■□□□ 1.38
CDT1Q9H211 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.64■■□□□ 1.38
CDT1Q9H211 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CDT1Q9H211 BX005040.4-201ENST00000637145 1518 ntBASIC23.64■■□□□ 1.38
CDT1Q9H211 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CDT1Q9H211 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CDT1Q9H211 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.37
CDT1Q9H211 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
CDT1Q9H211 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 AL162430.1-201ENST00000480705 870 ntBASIC23.64■■□□□ 1.37
CDT1Q9H211 TERF1P2-201ENST00000583350 1212 ntBASIC23.64■■□□□ 1.37
CDT1Q9H211 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
CDT1Q9H211 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
CDT1Q9H211 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CDT1Q9H211 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 AC034268.1-201ENST00000441047 882 ntBASIC23.63■■□□□ 1.37
CDT1Q9H211 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.63■■□□□ 1.37
CDT1Q9H211 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CDT1Q9H211 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 C1orf229-201ENST00000623686 2258 ntBASIC23.62■■□□□ 1.37
CDT1Q9H211 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.62■■□□□ 1.37
CDT1Q9H211 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.62■■□□□ 1.37
CDT1Q9H211 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.62■■□□□ 1.37
CDT1Q9H211 AC137767.1-201ENST00000602918 1920 ntBASIC23.62■■□□□ 1.37
CDT1Q9H211 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.62■■□□□ 1.37
CDT1Q9H211 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CDT1Q9H211 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.61■■□□□ 1.37
CDT1Q9H211 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.61■■□□□ 1.37
CDT1Q9H211 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.61■■□□□ 1.37
CDT1Q9H211 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CDT1Q9H211 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.61■■□□□ 1.37
CDT1Q9H211 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.61■■□□□ 1.37
CDT1Q9H211 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CDT1Q9H211 LINC00526-201ENST00000581067 1875 ntBASIC23.61■■□□□ 1.37
CDT1Q9H211 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CDT1Q9H211 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CDT1Q9H211 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDT1Q9H211 KRT18P14-201ENST00000534205 1250 ntBASIC23.6■■□□□ 1.37
CDT1Q9H211 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
CDT1Q9H211 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.6■■□□□ 1.37
CDT1Q9H211 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CDT1Q9H211 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CDT1Q9H211 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.59■■□□□ 1.37
CDT1Q9H211 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CDT1Q9H211 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CDT1Q9H211 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.59■■□□□ 1.37
CDT1Q9H211 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.59■■□□□ 1.37
CDT1Q9H211 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.59■■□□□ 1.37
CDT1Q9H211 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.59■■□□□ 1.37
CDT1Q9H211 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
CDT1Q9H211 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CDT1Q9H211 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CDT1Q9H211 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDT1Q9H211 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CDT1Q9H211 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
CDT1Q9H211 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CDT1Q9H211 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.58■■□□□ 1.37
CDT1Q9H211 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CDT1Q9H211 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.58■■□□□ 1.37
CDT1Q9H211 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms