Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.11■□□□□ 0.49
SSX3Q99909 AC142381.2-201ENST00000566120 298 ntBASIC18.11■□□□□ 0.49
SSX3Q99909 AC009086.3-201ENST00000623486 1008 ntBASIC18.11■□□□□ 0.49
SSX3Q99909 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.11■□□□□ 0.49
SSX3Q99909 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 AC007375.3-201ENST00000600936 2314 ntBASIC18.11■□□□□ 0.49
SSX3Q99909 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SSX3Q99909 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX3Q99909 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SSX3Q99909 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX3Q99909 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SSX3Q99909 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 EDA-201ENST00000338901 1233 ntBASIC18.1■□□□□ 0.49
SSX3Q99909 AL355001.2-201ENST00000620617 1191 ntBASIC18.1■□□□□ 0.49
SSX3Q99909 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SSX3Q99909 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX3Q99909 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX3Q99909 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.09■□□□□ 0.49
SSX3Q99909 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SSX3Q99909 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX3Q99909 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.09■□□□□ 0.49
SSX3Q99909 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.09■□□□□ 0.49
SSX3Q99909 AL138724.1-201ENST00000606771 1088 ntBASIC18.09■□□□□ 0.49
SSX3Q99909 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SSX3Q99909 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SSX3Q99909 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX3Q99909 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SSX3Q99909 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX3Q99909 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SSX3Q99909 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
SSX3Q99909 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX3Q99909 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SSX3Q99909 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.08■□□□□ 0.49
SSX3Q99909 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SSX3Q99909 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SSX3Q99909 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SSX3Q99909 AC006455.2-201ENST00000429931 906 ntBASIC18.08■□□□□ 0.48
SSX3Q99909 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.08■□□□□ 0.48
SSX3Q99909 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.08■□□□□ 0.48
SSX3Q99909 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SSX3Q99909 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.08■□□□□ 0.48
SSX3Q99909 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SSX3Q99909 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.07■□□□□ 0.48
SSX3Q99909 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.07■□□□□ 0.48
SSX3Q99909 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
SSX3Q99909 MIR4767-201ENST00000582827 78 ntBASIC18.07■□□□□ 0.48
SSX3Q99909 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.07■□□□□ 0.48
SSX3Q99909 AC011298.3-201ENST00000615796 283 ntBASIC18.07■□□□□ 0.48
SSX3Q99909 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
SSX3Q99909 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.07■□□□□ 0.48
SSX3Q99909 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SSX3Q99909 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SSX3Q99909 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SSX3Q99909 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX3Q99909 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SSX3Q99909 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SSX3Q99909 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX3Q99909 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX3Q99909 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.06■□□□□ 0.48
SSX3Q99909 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX3Q99909 SUDS3P1-201ENST00000505831 966 ntBASIC18.06■□□□□ 0.48
SSX3Q99909 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX3Q99909 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.06■□□□□ 0.48
SSX3Q99909 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX3Q99909 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SSX3Q99909 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.06■□□□□ 0.48
SSX3Q99909 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms