Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC116Q8IYX3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 AL136162.1-201ENST00000607711 1078 ntBASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC116Q8IYX3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 AC092053.2-201ENST00000640557 1818 ntBASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 AC096631.2-201ENST00000436136 790 ntBASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 AC024257.2-201ENST00000549699 147 ntBASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC116Q8IYX3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC116Q8IYX3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 SLC47A1P1-202ENST00000449666 945 ntBASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 MIR4767-201ENST00000582827 78 ntBASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 AC068587.7-201ENST00000641602 218 ntBASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC116Q8IYX3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 AC135279.3-201ENST00000610945 1311 ntBASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC116Q8IYX3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CCDC116Q8IYX3 PBX2P1-201ENST00000493219 1291 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms