Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC28AQ8IWP9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC28AQ8IWP9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC28AQ8IWP9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28AQ8IWP9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28AQ8IWP9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28AQ8IWP9 AC080038.3-201ENST00000623346 1952 ntBASIC18.08■□□□□ 0.49
CCDC28AQ8IWP9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28AQ8IWP9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28AQ8IWP9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28AQ8IWP9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28AQ8IWP9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms