Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.02■■□□□ 1.6
SH3RF1Q7Z6J0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SH3RF1Q7Z6J0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 TERF1P2-201ENST00000583350 1212 ntBASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 GUSBP5-202ENST00000510805 1989 ntBASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 EP400NL-214ENST00000641289 2402 ntBASIC25■■□□□ 1.59
SH3RF1Q7Z6J0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.99■■□□□ 1.59
SH3RF1Q7Z6J0 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.99■■□□□ 1.59
SH3RF1Q7Z6J0 AL354811.1-201ENST00000610286 706 ntBASIC24.99■■□□□ 1.59
SH3RF1Q7Z6J0 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SH3RF1Q7Z6J0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.99■■□□□ 1.59
SH3RF1Q7Z6J0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SH3RF1Q7Z6J0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 ESRRAP2-201ENST00000418437 1549 ntBASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
SH3RF1Q7Z6J0 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC24.96■■□□□ 1.59
SH3RF1Q7Z6J0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 ECEL1P1-201ENST00000373592 1742 ntBASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.95■■□□□ 1.59
SH3RF1Q7Z6J0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.95■■□□□ 1.58
SH3RF1Q7Z6J0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.94■■□□□ 1.58
SH3RF1Q7Z6J0 FP325331.1-202ENST00000623531 1380 ntBASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.93■■□□□ 1.58
SH3RF1Q7Z6J0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms