Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM1Q2M3G4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.58■■□□□ 1.68
SHROOM1Q2M3G4 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.58■■□□□ 1.68
SHROOM1Q2M3G4 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM1Q2M3G4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 AC016769.1-201ENST00000409132 1010 ntBASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 HLA-L-209ENST00000420110 1011 ntBASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 DUSP8P5-201ENST00000422884 1815 ntBASIC25.56■■□□□ 1.68
SHROOM1Q2M3G4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM1Q2M3G4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM1Q2M3G4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 AC011767.1-201ENST00000617410 1153 ntBASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SHROOM1Q2M3G4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 AC079140.4-201ENST00000507448 529 ntBASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 GXYLT1P5-201ENST00000614548 1189 ntBASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 AC005224.4-201ENST00000583262 1652 ntBASIC25.52■■□□□ 1.68
SHROOM1Q2M3G4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 ESRRAP2-201ENST00000418437 1549 ntBASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 LINC01960-201ENST00000563759 1884 ntBASIC25.51■■□□□ 1.67
SHROOM1Q2M3G4 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.5■■□□□ 1.67
SHROOM1Q2M3G4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms