Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.74□□□□□ -0.21
HSPG2P98160 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HSPG2P98160 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HSPG2P98160 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC13.74□□□□□ -0.21
HSPG2P98160 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC13.73□□□□□ -0.21
HSPG2P98160 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
HSPG2P98160 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HSPG2P98160 MFF-207ENST00000409565 1548 ntTSL 2 BASIC13.73□□□□□ -0.21
HSPG2P98160 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
HSPG2P98160 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 INO80E-214ENST00000620599 515 ntTSL 2 BASIC13.73□□□□□ -0.21
HSPG2P98160 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 LSR-205ENST00000427250 1606 ntTSL 2 BASIC13.73□□□□□ -0.21
HSPG2P98160 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HSPG2P98160 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HSPG2P98160 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HSPG2P98160 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC13.73□□□□□ -0.21
HSPG2P98160 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC13.73□□□□□ -0.21
HSPG2P98160 LINC01023-201ENST00000606054 436 ntBASIC13.73□□□□□ -0.21
HSPG2P98160 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HSPG2P98160 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.72□□□□□ -0.21
HSPG2P98160 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 AC026366.1-201ENST00000488803 879 ntBASIC13.72□□□□□ -0.21
HSPG2P98160 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HSPG2P98160 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC13.72□□□□□ -0.21
HSPG2P98160 AL161729.1-201ENST00000604104 1402 ntBASIC13.72□□□□□ -0.21
HSPG2P98160 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC13.71□□□□□ -0.21
HSPG2P98160 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC13.71□□□□□ -0.21
HSPG2P98160 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC13.71□□□□□ -0.21
HSPG2P98160 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.71□□□□□ -0.21
HSPG2P98160 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.71□□□□□ -0.21
HSPG2P98160 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.71□□□□□ -0.21
HSPG2P98160 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
HSPG2P98160 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
HSPG2P98160 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC13.71□□□□□ -0.21
HSPG2P98160 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HSPG2P98160 AC010536.3-201ENST00000620306 533 ntBASIC13.71□□□□□ -0.22
HSPG2P98160 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HSPG2P98160 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
HSPG2P98160 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC13.7□□□□□ -0.22
HSPG2P98160 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC13.7□□□□□ -0.22
HSPG2P98160 UNC93B5-201ENST00000530315 699 ntBASIC13.7□□□□□ -0.22
HSPG2P98160 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
HSPG2P98160 AP001160.3-201ENST00000601484 763 ntBASIC13.7□□□□□ -0.22
HSPG2P98160 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HSPG2P98160 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.69□□□□□ -0.22
HSPG2P98160 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 Z99916.2-201ENST00000604037 246 ntBASIC13.69□□□□□ -0.22
HSPG2P98160 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC13.69□□□□□ -0.22
HSPG2P98160 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HSPG2P98160 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.69□□□□□ -0.22
HSPG2P98160 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HSPG2P98160 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC13.68□□□□□ -0.22
HSPG2P98160 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC13.68□□□□□ -0.22
HSPG2P98160 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC13.68□□□□□ -0.22
HSPG2P98160 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HSPG2P98160 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
HSPG2P98160 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HSPG2P98160 KRT18P21-201ENST00000515767 1272 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms