Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SNORA78-201ENST00000459373 127 ntBASIC16.05■□□□□ 0.16
PRKDCP78527 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKDCP78527 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.05■□□□□ 0.16
PRKDCP78527 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRKDCP78527 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRKDCP78527 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PRKDCP78527 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PRKDCP78527 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PRKDCP78527 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.04■□□□□ 0.16
PRKDCP78527 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PRKDCP78527 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PRKDCP78527 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKDCP78527 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.04■□□□□ 0.16
PRKDCP78527 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.04■□□□□ 0.16
PRKDCP78527 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PRKDCP78527 MIR718-201ENST00000390190 70 ntBASIC16.04■□□□□ 0.16
PRKDCP78527 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.04■□□□□ 0.16
PRKDCP78527 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.04■□□□□ 0.16
PRKDCP78527 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PRKDCP78527 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.04■□□□□ 0.16
PRKDCP78527 ST7-202ENST00000323984 2142 ntTSL 5 BASIC16.03■□□□□ 0.16
PRKDCP78527 ST7-207ENST00000393449 2127 ntTSL 5 BASIC16.03■□□□□ 0.16
PRKDCP78527 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PRKDCP78527 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PRKDCP78527 AC010536.3-201ENST00000620306 533 ntBASIC16.03■□□□□ 0.16
PRKDCP78527 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PRKDCP78527 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.03■□□□□ 0.16
PRKDCP78527 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PRKDCP78527 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.03■□□□□ 0.16
PRKDCP78527 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC16.03■□□□□ 0.16
PRKDCP78527 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PRKDCP78527 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.03■□□□□ 0.16
PRKDCP78527 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
PRKDCP78527 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.03■□□□□ 0.16
PRKDCP78527 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.02■□□□□ 0.16
PRKDCP78527 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC16.02■□□□□ 0.16
PRKDCP78527 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PRKDCP78527 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
PRKDCP78527 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.02■□□□□ 0.16
PRKDCP78527 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PRKDCP78527 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PRKDCP78527 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PRKDCP78527 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
PRKDCP78527 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PRKDCP78527 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PRKDCP78527 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PRKDCP78527 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC16.02■□□□□ 0.15
PRKDCP78527 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PRKDCP78527 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PRKDCP78527 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PRKDCP78527 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKDCP78527 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.01■□□□□ 0.15
PRKDCP78527 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PRKDCP78527 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PRKDCP78527 UBE2SP1-201ENST00000450587 669 ntBASIC16.01■□□□□ 0.15
PRKDCP78527 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC16.01■□□□□ 0.15
PRKDCP78527 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16■□□□□ 0.15
PRKDCP78527 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC16■□□□□ 0.15
PRKDCP78527 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16■□□□□ 0.15
PRKDCP78527 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
PRKDCP78527 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16■□□□□ 0.15
PRKDCP78527 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16■□□□□ 0.15
PRKDCP78527 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 AC091874.3-201ENST00000512672 1195 ntBASIC16■□□□□ 0.15
PRKDCP78527 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16■□□□□ 0.15
PRKDCP78527 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PRKDCP78527 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PRKDCP78527 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16■□□□□ 0.15
PRKDCP78527 ALDH1A3-203ENST00000557963 1670 ntBASIC15.99■□□□□ 0.15
PRKDCP78527 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.99■□□□□ 0.15
PRKDCP78527 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PRKDCP78527 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms