Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CDH3P22223 AP005435.1-201ENST00000529293 1178 ntBASIC21.19■□□□□ 0.98
CDH3P22223 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
CDH3P22223 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.19■□□□□ 0.98
CDH3P22223 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.19■□□□□ 0.98
CDH3P22223 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDH3P22223 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CDH3P22223 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.18■□□□□ 0.98
CDH3P22223 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CDH3P22223 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CDH3P22223 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.18■□□□□ 0.98
CDH3P22223 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDH3P22223 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CDH3P22223 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CDH3P22223 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH3P22223 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH3P22223 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.17■□□□□ 0.98
CDH3P22223 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CDH3P22223 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDH3P22223 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CDH3P22223 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CDH3P22223 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.16■□□□□ 0.98
CDH3P22223 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDH3P22223 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CDH3P22223 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CDH3P22223 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
CDH3P22223 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.15■□□□□ 0.98
CDH3P22223 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.15■□□□□ 0.98
CDH3P22223 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CDH3P22223 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.15■□□□□ 0.98
CDH3P22223 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDH3P22223 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH3P22223 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH3P22223 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH3P22223 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH3P22223 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.14■□□□□ 0.98
CDH3P22223 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDH3P22223 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH3P22223 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH3P22223 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.14■□□□□ 0.97
CDH3P22223 MIR572-201ENST00000384983 95 ntBASIC21.14■□□□□ 0.97
CDH3P22223 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH3P22223 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.14■□□□□ 0.97
CDH3P22223 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.14■□□□□ 0.97
CDH3P22223 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CDH3P22223 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CDH3P22223 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.97
CDH3P22223 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDH3P22223 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDH3P22223 C9orf163-202ENST00000624034 2573 ntBASIC21.13■□□□□ 0.97
CDH3P22223 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.13■□□□□ 0.97
CDH3P22223 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms