Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMS4P0CW20 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMS4P0CW20 FEM1AP4-201ENST00000443167 1987 ntBASIC19.34■□□□□ 0.69
LIMS4P0CW20 AC004687.1-201ENST00000579003 1625 ntBASIC19.34■□□□□ 0.69
LIMS4P0CW20 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMS4P0CW20 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMS4P0CW20 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMS4P0CW20 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
LIMS4P0CW20 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LIMS4P0CW20 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.33■□□□□ 0.69
LIMS4P0CW20 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMS4P0CW20 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LIMS4P0CW20 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS4P0CW20 AC004987.1-201ENST00000428627 508 ntBASIC19.33■□□□□ 0.68
LIMS4P0CW20 ATP5G2P3-201ENST00000429083 425 ntBASIC19.33■□□□□ 0.68
LIMS4P0CW20 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS4P0CW20 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.33■□□□□ 0.68
LIMS4P0CW20 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS4P0CW20 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS4P0CW20 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS4P0CW20 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS4P0CW20 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.32■□□□□ 0.68
LIMS4P0CW20 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMS4P0CW20 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS4P0CW20 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMS4P0CW20 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMS4P0CW20 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 MIR4508-201ENST00000584178 70 ntBASIC19.31■□□□□ 0.68
LIMS4P0CW20 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LIMS4P0CW20 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIMS4P0CW20 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS4P0CW20 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMS4P0CW20 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMS4P0CW20 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS4P0CW20 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS4P0CW20 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS4P0CW20 MIR6722-201ENST00000617286 78 ntBASIC19.3■□□□□ 0.68
LIMS4P0CW20 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS4P0CW20 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS4P0CW20 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMS4P0CW20 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMS4P0CW20 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 ABHD17AP5-201ENST00000580133 923 ntBASIC19.29■□□□□ 0.68
LIMS4P0CW20 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 AL157384.1-201ENST00000445995 2473 ntBASIC19.29■□□□□ 0.68
LIMS4P0CW20 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS4P0CW20 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMS4P0CW20 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMS4P0CW20 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 AC137630.3-201ENST00000607245 391 ntBASIC19.28■□□□□ 0.68
LIMS4P0CW20 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms